Table 4 Using the annotation derived from FL-cDNAs, the alternative splicing effects are classified relative to the CDS and UTRs.
From: Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
Rice | |||||||||
|---|---|---|---|---|---|---|---|---|---|
Type | AA | AD | ATE | SE | RE | IWI | TWI | SI | RI |
CDS contained | 1,508 | 679 | 390 | 311 | 184 | 1,224 | 1,353 | 351 | 2,111 |
CDS overlaps UTRs | 1 | 1 | 113 | 75 | 2 | 0 | 0 | 342 | 0 |
3' UTRs contained | 183 | 71 | 47 | 21 | 25 | 34 | 147 | 416 | 146 |
3' UTR overlaps CDS | 1 | 1 | 49 | 23 | 0 | 0 | 0 | 246 | 0 |
5' UTR contained | 468 | 336 | 200 | 80 | 65 | 136 | 84 | 367 | 165 |
5' UTR overlaps CDS | 0 | 0 | 178 | 56 | 2 | 0 | 0 | 98 | 0 |
Totals | 2,161 | 1,088 | 977 | 566 | 278 | 1,394 | 1,584 | 1,820 | 2,422 |
Arabidopsis | |||||||||
Type | AA | AD | ATE | SE | RE | IWI | TWI | SI | RI |
CDS contained | 1,206 | 509 | 97 | 138 | 65 | 330 | 441 | 211 | 1,789 |
CDS overlaps UTRs | 0 | 0 | 37 | 26 | 0 | 0 | 0 | 106 | 0 |
3' UTRs contained | 56 | 24 | 4 | 3 | 1 | 6 | 49 | 74 | 57 |
3' UTR overlaps CDS | 0 | 0 | 11 | 4 | 0 | 0 | 0 | 63 | 0 |
5' UTR contained | 234 | 160 | 58 | 24 | 20 | 86 | 16 | 202 | 140 |
5' UTR overlaps CDS | 0 | 0 | 109 | 22 | 0 | 0 | 0 | 43 | 0 |
Totals | 1,496 | 693 | 316 | 217 | 86 | 422 | 506 | 699 | 1,986 |