Skip to main content

Table 4 Using the annotation derived from FL-cDNAs, the alternative splicing effects are classified relative to the CDS and UTRs.

From: Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

Rice
Type AA AD ATE SE RE IWI TWI SI RI
CDS contained 1,508 679 390 311 184 1,224 1,353 351 2,111
CDS overlaps UTRs 1 1 113 75 2 0 0 342 0
3' UTRs contained 183 71 47 21 25 34 147 416 146
3' UTR overlaps CDS 1 1 49 23 0 0 0 246 0
5' UTR contained 468 336 200 80 65 136 84 367 165
5' UTR overlaps CDS 0 0 178 56 2 0 0 98 0
Totals 2,161 1,088 977 566 278 1,394 1,584 1,820 2,422
Arabidopsis
Type AA AD ATE SE RE IWI TWI SI RI
CDS contained 1,206 509 97 138 65 330 441 211 1,789
CDS overlaps UTRs 0 0 37 26 0 0 0 106 0
3' UTRs contained 56 24 4 3 1 6 49 74 57
3' UTR overlaps CDS 0 0 11 4 0 0 0 63 0
5' UTR contained 234 160 58 24 20 86 16 202 140
5' UTR overlaps CDS 0 0 109 22 0 0 0 43 0
Totals 1,496 693 316 217 86 422 506 699 1,986
  1. The categories are mutually exclusive in this analysis (i.e. those isoforms in one category are not present in any of the other five categories).