Skip to main content

Table 1 Upstream (relative to the 3'-processing site) usage of AAUAAA, AWUAAA (W = A or U) or Delta 1 (AAUAAA plus all single base substitution variations).

From: A multispecies comparison of the metazoan 3'-processing downstream elements and the CstF-64 RNA recognition motif

Organism Min EST Sites % AAUAAA Count % AWUAAA Count % Delta 1 Count
H. sapiens 10 10060 69.9 7032 86.0 8654 97.5 9806
C. familiaris 2 980 70.9 694 86.5 847 95.6 936
R. norvegicus 5 9329 69.7 6501 85.3 7958 97.3 9074
M. musculus 5 8543 70.9 6053 86.0 7342 97.0 8288
G. gallus 2 3056 70.0 2140 85.2 2604 96.0 2932
T. rubripes 1 1427 69.9 997 88.3 1259 96.6 1377
D. rerio 3 2585 77.9 2012 91.1 2355 98.1 2535
A. gambiae 1 1693 61.8 1046 71.7 537 88.9 1505
D. melanogaster 2 902 61.7 556 73.8 665 97.0 874
C. elegans 1 1003 51.0 511 71.6 717 87.7 879