Table 2 Subsystems statistically more likely to be present in either the Red or Black samples. These subsystems are more frequently found among sequences from either the Red or Black samples with a sample size of 5,000 proteins, 20,000 repeated samples, and P < 0.05.
From: Using pyrosequencing to shed light on deep mine microbial ecology
Red Sample (Oxidized, pH4.37, E h -8) | Black Sample (Reduced, pH 6.70, E h -142) |
|---|---|
Amino Acids and Derivatives | |
Arginine biosynthesis | Urea decomposition |
Tryptophan synthesis | Chorismate synthesis |
Asp-Glu-tRNA(Asn-Gln) transamidation | Branched-chain amino acid biosynthesis |
Histidine biosynthesis | Isoleucine degradation |
| Â | Leucine biosynthesis |
| Â | Leucine degradation and HMG-CoA metabolism |
| Â | Valine degradation |
| Â | Methionine salvage |
Carbohydrates | |
| Â | Glyoxylate synthesis |
Cell Division and Cell Cycle | |
Cytoskeleton | Â |
Cell Wall and Capsule | |
| Â | N-linked glycosylation in Bacteria |
| Â | Teichoic acid biosynthesis |
Cofactors, Vitamins, Prosthetic Groups, Pigments | |
Folate biosynthesis | Coenzyme A biosynthesis in pathogens |
Methylglyoxal metabolism | Molybdopterin biosynthesis |
Pyruvate metabolism I: anaplerotic rx, PEP | Carotenoids |
Ubiquinone biosynthesis | Polyisoprenoid biosynthesis |
Ubiquinone menaquinone-cytochrome c reductase | NAD and NADP cofactor biosynthesis global |
Riboflavin metabolism | Coenzyme PQQ synthesis |
| Â | Pyrroloquinoline quinone biosynthesis |
| Â | Siderophore enterobactin biosynthesis |
| Â | Siderophore enterobactin biosynthesis and ferric enterobactin transport |
| Â | Thiamin biosynthesis |
DNA metabolism | |
DNA repair, bacterial | Â |
Fatty Acids and Lipids | |
Fatty acid metabolism | Glycerolipid and glycerphospholipid metabolism |
Fatty acid oxidation pathway | Â |
Membrane Transport | |
ABC transporter maltose | ABC transporter ferrichrome |
| Â | ABC transporter heme |
| Â | CbiQO-type ABC transporter systems |
| Â | Sodium hydrogen antiporter |
Metabolism of aromatic compounds | |
Phenylacetate pathway of aromatic compound degradation | Homogentisate pathway of aromatic compound degradation |
Motility and Chemotaxis | |
Bacterial chemotaxis | Â |
Flagellum | Â |
Nitrogen Metabolism | |
| Â | Denitrification |
Nucleosides and Nucleotides | |
De novo purine biosynthesis | Â |
Ribonucleotide reduction | Â |
Protein Metabolism | |
Ribosome LSU bacterial | Phenylpropionate degradation |
Ribosome SSU bacterial | Â |
Translation factors bacterial | Â |
Universal GTPases | Â |
Protein degradation | Â |
Respiration | |
F0F1-type ATP synthase | NiFe hydrogenase maturation |
Terminal cytochrome C oxidases | Â |
Hydrogenases | Â |
Membrane-bound Ni, Fe-hydrogenase | Â |
Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes | Â |
Respiratory complex I | Â |
Respiratory dehydrogenases 1 | Â |
RNA metabolism | |
Polyadenylation bacterial | Â |
RNA polymerase bacterial | Â |
tRNA aminoacylation | Â |
Stress response | |
Glutathione redox metabolism | Â |
ppGpp biosynthesis | Â |
Sulfur Metabolism | |
Sulfate assimilation | Â |
Virulence | |
Resistance to fluoroquinolones | Â |