Table 3 Conserved syntenic regions with three or more gene pairs between the pseudo-ancestral Arabidopsis genome and Prunus genetic maps.
Peach | |||||
|---|---|---|---|---|---|
Group | # Pairs | Arabidopsis | Putative Function | EST Name | BAC Contig |
ga18 | 3 | AT5G47350 | palmitoyl protein thioesterase family protein | PP_LEa0012C18f | FxT-G2F |
AT4G17720 | RNA recognition motif (RRM)-containing protein | PP_LEa0027L14f | |||
AT5G47710 | C2 domain-containing protein contains | PP_LEa0011F23f | |||
ga28 | 3 | AT5G07340 | calnexin, putative | PP_LEa0006I23f | FxT-G3F |
AT5G07990 | flavonoid 3'-monooxygenase | PP_LEa0007M11f | |||
AT5G61580 | phosphofructokinase family protein | PP_LEa0001K06f | |||
ga29 | 3 | AT5G14650 | polygalacturonase, putative/pectinase, putative | PP_LEa0030E14f | FxT-G3F |
AT3G01610 | AAA-type ATPase family protein | PP_LEa0001O24f | |||
AT5G14370 | expressed protein | PP_LEa0011N22f | |||
ga54 | 3 | AT5G59180 | DNA-directed RNA polymerase II | PP_LEa0026O17f | TxE-G1 |
AT5G59840 | Ras-related GTP-binding family protein epsin N-terminal homology (ENTH) domain-containing | PP_LEa0036D15f | |||
AT3G46540 | PP_LEa0003I01f | ||||
ga60 | 4 | AT2G24640 | ubiquitin carboxyl-terminal hydrolase family protein | PP_LEa0006J17f | TxE-G1 |
AT4G32400 | mitochondrial substrate carrier family protein | PP_LEa0009H16f | |||
AT2G25420 | transducin family protein | PP_LEa0009H21f | |||
AT2G25160 | cytochrome P450 | PP_LEa0013L12f | |||
ga66 | 3 | AT4G17720 | RNA recognition motif (RRM)-containing protein | PP_LEa0027L14f | TxE-G2 |
AT5G47350 | palmitoyl protein thioesterase family protein | PP_LEa0012C18f | |||
AT5G47710 | C2 domain-containing protein | PP_LEa0011F23f | |||
ga77 | 3 | AT4G17486 | expressed protein | PP_LEa0005J05f | TxE-G5 |
AT5G47350 | palmitoyl protein thioesterase family protein | PP_LEa0012C18f | |||
AT4G17615 | calcineurin B-like protein 1 (CBL1) | PP_LEa0009N08f | |||
ga79 | 3 | AT5G25170 | expressed protein | PP_LEa0005J05f | TxE-G5 |
AT5G11110 | sucrose-phosphate synthase | PP_LEa0003F22f | |||
AT5G10840 | endomembrane protein 70, putative TM4 family; | PP_LEa0015M20f | |||
ga81 | 4 | AT4G31940 | cytochrome P450 | PP_LEa0013L12f | TxE-G5 |
AT2G25190 | expressed protein | PP_LEa0005J05f | |||
AT2G25160 | cytochrome P450 | PP_LEa0013L12f | |||
AT4G31810 | enoyl-CoA hydratase/isomerase family protein | PP_LEa0009I06f | |||
ga83 | 3 | AT1G66540 | cytochrome P450 | PP_LEa0013L12f | TxE-G5 |
AT1G66250 | glycosyl hydrolase family 17 protein | PP_LEa0012I12f | |||
AT1G66680 | S locus-linked protein | PP_LEa0003H24f | |||
ga94 | 3 | AT5G58160 | formin homology 2 domain-containing protein | PP_LEa0035A24f | TxE-G6 |
AT5G57990 | ubiquitin-specific protease 23 | PP_LEa0006J17f | |||
AT5G58590 | Ran-binding protein 1, putative/RanBP1, putative | PP_LEa0003G19f | |||
ga95 | 3 | AT5G01870 | lipid transfer protein, putative | PP_LEa0029C22f | TxE-G6 |
AT3G08560 | vacuolar ATP synthase subunit E | PP_LEa0009M17f | |||
AT3G08710 | thioredoxin family protein | PP_LEa0016G12f | |||