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Table 2 Comparison of mutant and gene positions

From: Large-scale mapping of mutations affecting zebrafish development

Abbr. Allele LG Pos. Gene Gene Pos. Panels Diff.
acc tq206 3 52.3 atp2a1 54.00 T51, HS -1.70
boz th211 15 57.3 dharma 57.77 LN54, HS -0.47
cdy te216 11 0.5 slc11a2 0.00 HS 0.50
con tf18b 20 96.2 disp1 98.57 HS -2.37
dtr tm276b 6 85.3 gli1 85.40 MGH, HS -0.10
eya1 tm90b 24 36.2 eya1 42.90 LN54, T51 -6.70
frs tg280a 8 82.2 slc25a37 [LG17] HS a n.d.
ika tm127c 14 33.0 fgf24 34.97 T51 -1.97
kgg tl240a 14 57.2 cdx4 56.00 T51, HS, MOP 1.20
mfn tc263 1 37.2 tll1 37.10 MGH, HS 0.10
mib ta52b 2 20.9 mib 35.54 T51 -14.64
mon tg234 8 42.5 trim33 52.85 HS, T51 -10.35
mot tm303c 16 41.6 epb41 46.90 T51 -5.30
nic dtbn12 6 31.1 chrna1 43.62 HS, T51, MOP, LN54 -12.52
oep tz257 10 20.0 oep 12.20 LN54, T51 7.80
ovl tz288 9 50.1 ift88 [LG13] HS b n.d.
ris tb237 17 47.9 sptb 45.50 HS, MGH 2.40
spt tm41 8 94.2 tbx16 96.03 T51, LN54, MOP -1.83
suc tf216b 19 20.9 edn1 11.90 MGH, LN54, T51 9.00
ubo tp39 16 24.2 prdm1 28.08 LN54 -3.88
you ty97 7 40.5 scube2 37.90 HS 2.60
  1. Map positions of mutations that were mapped in our project and cloned by other researchers are shown together with the ZMAP positions of the affected genes (publicly available from ZFIN [10]). The gene positions originate from several mapping panels: MGH [5] [6] [7]; Heat Shock (HS) [14] [15] [16], T51 [26] [27] [28] (Yi Zhou and Leonard Zon, unpublished data); LN54 [29] [30]; and Mother of Pearl (MOP) [31]. References to the original publications of the individual genes are not included here due to space constraints, but are likewise available from ZFIN. The map positions were subsequently intercalated into the MGH genetic map to produce the integrated ZMAP (Allen Day, Tom Conlin and John H. Postlethwait, unpublished). If a gene was mapped on more than one panel, the median position is shown. Only genes or gene-encoded markers directly placed on ZMAP are shown (rather than genes mapped through genomic clones or linked markers). Such data are available for 21 genes out of the 42 that are known to correspond to mutations in Additional file 1. Allele: allele designation; Abbr.: mutant abbreviation; LG: linkage group; Pos.: map position (cM distance from the top of the LG); Gene: gene symbol; Gene Pos.: Median gene position on ZMAP (cM distance from the top of the LG); Panels: mapping panels on which the gene was mapped; Diff.: difference between mutant and gene positions (cM). a Assignment to LG8 supported by published marker linkages [17]. b Assignment to LG9 supported by the T51 panel (as shown on the ZFIN website) and by the latest version of the HS map [18].
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