Skip to main content

Advertisement

Table 2 Genomic sequence annotation of the R1- and r1-contig.

From: Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments

ORF No. (1) Manual Functional Annotation (2) ORF No.(1) Manual Functional Annotation (2)
1 Fragment of disease resistance protein 27 F-box protein-like
2 ZF-HD homeobox protein 28 MuDR transposase
3 Unknown protein 29 F-box protein
4 Ribosomal protein L34e 30 F-box protein
5 No apical meristem (NAM)-like 31 F-box protein
6 Hypothetical protein 32 F-box protein
7 Retrotransposon RNAse containing 33 F-box protein
8 Hypothetical protein 34 F-box associated domain containing protein
9 Retrotransposon 35 Hypothetical protein
10 F-box protein 36 Pseudogene (F-box protein-like)
11 Retrotransposon 37 F-box protein
12 RNAseH containing reverse transcriptase 38 TCP transcription factor
13 F-box protein 39 Unknown protein
14 RNA dependent RNA polymerase 40 Retrotransposon
14/1 Transposon fragment 41 Unknown protein
15 Hypothetical protein (Pseudogene) 42 Origin recognition complex subunit 6
16 RNA dependent RNA polymerase 43 Sterol desaturase/Acid phosphatase
17 CAAX amino terminal protease 44 Disease resistance protein (R1)
18 Methyltransferase 45 Disease resistance protein (R1_1, 82% identity to R1)
19 Phytochrome kinase substrate 46 Disease resistance protein (R1_2, 49.3% identity to R1)
19/1 Retrotransposon 47 HVA22-like protein
20 AAA ATPase 48 Regulator of chromosome condensation, RCC1
21 Retrotransposon(Pseudogene) 49 Retrotransposon
22 Disease resistance protein (R1-3, 74.7% identity to R1) 50 Hypothetical protein (Pseudogene)
22/1 Disease resistance protein (R1-6, 83.5% identity to R1) 51 Transposon-like
23 Disease resistance protein (R1_4, 80.2% identity to R1) 52 Disease resistance protein (R1_7, 80.7% identity to R1)
24 Disease resistance protein (R1_5, 85.9% to R1) 53 Retrotransposon
25 Retrotransposon 54 Disease resistance protein (R1_8, 83.2% identity to R1)
26 F-box protein-like   
  1. (1)ORFs are numbered according to Figure 1.
  2. (2)Manual functional annotation was based on BLAST hits and/or domain prediction results, see Methods. More details are shown in Additional file 5.