Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon

Leu, Jiann-Horng; Chang, Chih-Chin; Wu, Jin-Lu; Hsu, Chun-Wei; Hirono, Ikuo; Aoki, Takashi; Juan, Hsueh-Fen; Lo, Chu-Fang; Kou, Guang-Hsiung; Huang, Hsuan-Cheng

doi:10.1186/1471-2164-8-120

Table 2 The fifty most abundant genes in the normal library.

From: Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon

Gene Name	Species	Acc. No.	putative feature/function	EST no.
cytochromec oxidase subunit I	Penaeus monodon	gi\|7374116	ATP metabolism	366
cytochromec oxidase subunit II	Penaeus monodon	gi\|7374117	ATP metabolism	305
cytochromec oxidase subunit III	Penaeus monodon	gi\|7374118	ATP metabolism	164
ATP synthase F0 subunit6	Penaeus monodon	gi\|7374114	ATP metabolism	89
NADH dehydrogenase subunit5	Penaeus monodon	gi\|7374125	ATP metabolism	83
NADH dehydrogenase subunit 1	Penaeus monodon	gi\|7374120	ATP metabolism	81
NADH dehydrogenase subunit 4	Penaeus monodon	gi\|7374123	ATP metabolism	70
cytochrome b	Penaeus monodon	gi\|7374119	ATP metabolism	54
NADH dehydrogenase subunit 2	Penaeus monodon	gi\|7374121	ATP metabolism	22
ADP-ATP translocator	Ethmostigmus rubripes	gi\|15559050	ATP metabolism	14
NADH dehydrogenase subunit 6	Penaeus monodon	gi\|7374126	ATP metabolism	12
cytochrome oxidase subunit I	Fenneropenaeus sp. HCCP-2002	gi\|21666426	ATP metabolism	9
actin 2	Penaeus monodon	gi\|3907622	cytoskeleton/motility	41
Chain B, Apocrustacyanin C1 subunit	Homarus gammarus	gi\|33357653	cytosolic fatty-acid binding protein	10
cAMP responsive element binding protein-like 2	Homo sapiens	gi\|4503035	DNA binding/tumor suppressor	13
opsin	Procambarus clarkii	gi\|263970	eyestalk/vision	16
phosphopyruvate hydratase	Penaeus monodon	gi\|3885968	glycolysis	13
zinc proteinase Mpc1	Paralithodes camtschaticus	gi\|19774211	HP/digestive enyyme	11
trypsin	Litopenaeus vannamei	gi\|3006086	HP/digestive enzyme	19
trypsin	Litopenaeus vannamei	gi\|3006084	HP/digestive enzyme	16
Chymotrypsin BII	Litopenaeus vannamei	gi\|2462649	HP/digestive enzyme	7
Ferritin	Pacifastacus leniusculus	gi\|26006755	HP/immune-related	10
PMAV	Penaeus monodon	gi\|34576191	HP/immune-related	7
hemocyanin	Penaeus monodon	gi\|16612121	HP/oxygen transfer	62
hemocyanin	Litopenaeus vanname	gi\|854403	HP/oxygen transfer	34
hemocyanin	Litopenaeus vannamei	gi\|7414468	HP/oxygen transfer	20
LIM protein	Apriona germari	gi\|50982101	muscle	15
SCP, beta chain	Penaeus sp.	gi\|134315	muscle/calcium-binding	49
SCP, alpha-B and -A chains	Penaeus sp.	gi\|134312	muscle/calcium-binding	40
MLC1 protein	Anopheles gambiae	gi\|19572388	muslce	35
Myosin light chain 2	Drosophila melanogaster	gi\|16648286	muscle/cytoskeleton/motility	51
Troponin I	Pontastacus leptodactylus	gi\|136223	muscle/cytoskeleton/motility	31
Troponin C, isotype gamma	Pontastacus leptodactylus	gi\|136032	muscle/cytoskeleton/motility	19
slow muscle myosin S1 heavy chain	Homarus americanus	gi\|37925239	muscle/cytoskeleton/motility	16
fast myosin heavy chain	Homarus americanus	gi\|414985	muscle/cytoskeleton/motility	15
fast tropomyosin isoeorm	Homarus americanus	gi\|2660868	muscle/cytoskeleton/motility	8
arginine kinase	Penaeus monodon	gi\|27463265	muscle/energy pathway	28
Translation elongation factor EF-1alpha	Danio rerio	gi\|38174284	translation	18
nascent-polypeptide-associated complex alpha polypeptide	Homo sapiens	gi\|5031931	translation	10
ribosomal protein eL12	Artemia sp.	gi\|5689	translation	13
ribosomal protein L37	Spodoptera frugiperda	gi\|15213792	translation	12
Ribosomal_L22	Drosophila yakuba	gi\|38047573	translation	12
Ribosomal L14	Danio rerio	gi\|29294663	translation	11
ribosomal protein L23	Homo sapiens	gi\|13097600	translation	11
ribosomal protein S21	Branchiostoma belcheri tsingtaunese	gi\|30267907	translation	10
Rps16 protein	Mus musculus	gi\|52078405	translation	9
RpL9	Drosophila yakuba	gi\|38047669	translation	8
Ribosomal protein S17	Homo sapiens	gi\|38541200	translation	8
Ribosomal protein S24	Danio rerio	gi\|51980430	translation	7
ribosomal protein L35A	Spodoptera frugiperda	gi\|15213788	translation	⁷

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ISSN: 1471-2164

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