Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon

Leu, Jiann-Horng; Chang, Chih-Chin; Wu, Jin-Lu; Hsu, Chun-Wei; Hirono, Ikuo; Aoki, Takashi; Juan, Hsueh-Fen; Lo, Chu-Fang; Kou, Guang-Hsiung; Huang, Hsuan-Cheng

doi:10.1186/1471-2164-8-120

Table 3 The fifty most abundant genes in the WSSV-infected library.

From: Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon

GeneName	Species	Acc. No.	putative feature/function	EST no.
cytochromec oxidase subunit I	Penaeus monodon	gi\|7374116	ATP metabolism	488
cytochromec oxidase subunit II	Penaeus monodon	gi\|7374117	ATP metabolism	270
cytochromec oxidase subunit III	Penaeus monodon	gi\|7374118	ATP metabolism	174
cytochrome b	Penaeus monodon	gi\|7374119	ATP metabolism	112
ATP synthase F0 subunit 6	Penaeus monodon	gi\|7374114	ATP metabolism	86
NADH dehydrogenase subunit4	Penaeus monodon	gi\|7374123	ATP metabolism	60
NADH dehydrogenase subunit 5	Penaeus monodon	gi\|7374125	ATP metabolism	56
NADH dehydrogenase subunit 1	Penaeus monodon	gi\|7374120	ATP metabolism	43
NADH dehydrogenase subunit 2	Penaeus monodon	gi\|7374121	ATP metabolism	13
cytochrome oxidase subunit I	Fenneropenaeus sp	gi\|21666426	ATP metabolism	13
ATP lipid-binding protein like protein	Marsupenaeus japonicus	gi\|18700491	ATP metabolism	10
NADH dehydrogenase subunit 6	Penaeus monodon	gi\|7374126	ATP metabolism	9
Cytochrome c oxidase subunit IV	Drosophila melanogaster	gi\|16197913	ATP metabolism	8
ADP-ATP translocator	Ethmostigmus rubripes	gi\|15559050	ATP metabolism	7
CG14607-PA	Drosophila melanogaster	gi\|24644788	Chitin binding Peritrophin-A domain/immune	13
ENSANGP00000013986	Anopheles gambiae	gi\|31243037	Chitin binding Peritrophin-A domain/immune	10
ENSANGP00000023091	Anopheles gambiae	gi\|31200471	Chitin binding Peritrophin-A domain/immune	8
CG6055-PA	Drosophila melanogaster	gi\|7297257	C-type lectin (CTL) and CTL-like domains/immune	18
BCS-1	Balanus amphitrite	gi\|9186884	cuticle protein	324
Endocuticle structural glycoprotein SgAbd-8	Schistocerca gregaria	gi\|47605412	cuticle protein	32
calcification-associated peptide-1	Procambarus clarkii	gi\|33468738	cuticle protein	17
Cuticle protein AMP1A	Homarus americanus	gi\|3287772	cuticle protein	11
DD9B	Marsupenaeus japonicus	gi\|7008007	cuticle protein	10
cuticle protein 20	Manduca sexta	gi\|19548965	cuticle protein	9
actin1	Penaeus monodon	gi\|3907620	cytoskeleton/motility	17
Actin	Bombyx mori	gi\|113216	cytoskeleton/motility	14
beta actin	Homarus gammarus	gi\|34576243	cytoskeleton/motility	9
fructose 1,6-bisphosphate aldolase	Homalodisca coagulata	gi\|46561746	glycolysis	69
phosphopyruvate hydratase	Penaeus monodon	gi\|3885968	glycolysis	46
glyceraldehyde-3-phosphate dehydrogenase	Procambarus clarkii	gi\|31338868	glycolysis	10
triosephosphate isomerase	Archaeopotamobius sibirien	gi\|19848023	glycolysis	9
trypsin	Litopenaeus vannamei	gi\|3006086	HP/digestive enyyme	9
LIM protein	Apriona germari	gi\|50982101	muscle	31
SCP, alpha-B and -A chains	Penaeus sp.	gi\|134312	muscle/calcium-binding	18
MLC1 protein	Anopheles gambiae	gi\|19572388	muscle/cytoskeleton/motility	34
slow muscle myosin S1 heavy chain	Homarus americanus	gi\|37925239	muscle/cytoskeleton/motility	11
Troponin I	Pontastacus leptodactylus	gi\|136223	muscle/cytoskeleton/motility	9
arginine kinase	Penaeus monodon	gi\|27463265	muscle/enery pathway	40
thioredoxin-1	Mesobuthus cyprius	gi\|51869033	redox reaction	14
Translation elongation factor EF-1alpha (GTPase)	Danio rerio	gi\|38174284	translation	14
Ribosomal L18p	Xenopus laevis	gi\|27371036	translation	13
Ribosomal protein S24	Danio rerio	gi\|51980430	translation	12
ribosomal protein eL12	Artemia sp.	gi\|5689	translation	9
RpL9	Drosophila yakuba	gi\|38047669	translation	9
ribosomal protein L35A	Spodoptera frugiperda	gi\|15213788	translation	8
40S ribosomal protein S10	Ictalurus punctatus	gi\|15294031	translation	8
ribosomal protein L7	Spodoptera frugiperda	gi\|18253049	translation	8
Ribosomal L22	Drosophila yakuba	gi\|38047573	translation	7
Rps16 protein	Mus musculus	gi\|52078405	translation	7
porin	Anopheles gambiae	gi\|19697919	voltage dependent anion-selective channel	7

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ISSN: 1471-2164

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