From: Genome evolution in major Escherichia coli O157:H7 lineages
Region | Primer Sequences | Ta, °C |
---|---|---|
S-loop#14, OI#7 | ECs0236: 5'ggtaataccggcagacagaacatgg3' | 68 |
 | ECs0244: 5'gtagcgcagaactccatattctcc3' |  |
S-loop#16, OI#8 | NA | Â |
S-loop#69, OI#45 | ECs1160 (upstream): 5' ccgcctgcgatggtggttgc 3' | 60.2 |
 | ECs1252: 5' gggcgcgggtgattttgctctc 3' |  |
S-loop#72, OI#43/48 | ECs1374: 5' aaatgagacgccagcacctatcca 3' | 68 |
 | ECs1395: 5' aagcgagtaaggcagggaggagag 3' |  |
S-loop#78, OI#51 | ECs1575: 5'taaccacgctaccagtagccagaag 3' | 68 |
 | ECs1601: 5' gctactacctgcatcgtgccagtat 3' |  |
S-loop#83, OI#55 | ECs1688 : 5'caccagtgcctgccagtcaatatct3' | 52 |
 | ECs1707: 5'atgtcaacgacgcctctggatatgc3' |  |
S-loop#85, OI#71 | NA | Â |
S-loop#91/92/93 | ECs1927: 5' tgcctcccgcccaactcacg 3' | 60 |
 | ECs1958: 5' tagtcatcccccgccccacataac 3' |  |
S-loop#153, OI#93 | NA | Â |
S-loop#286, OI#172 | ECs5240: 5' ggcacgccgatttccgacaa 3' | 68 |
 | ECs5253: 5' aagcaaccgcccccgacatc 3' |  |
KI#71 | b1142: 5' aactggtaccgccaagactacac3' | ND |
 | b1156: 5' ccgatactgaagcacagcatagc3' |  |
KI#121 | b2360: 5' taatatgcgtgccgtcagtgtgc3' | ND |
 | b2363: 5' ctgccagatgatccaaccgagag3' |  |
b1518-20 (backbone) | b1520/Z2184: 5' gttctacgctggtggaccgtatc3' | 68 |
 | b1518/Z2187: 5' agatgaagacgcagtggcgttcc3' |  |