Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species

Table 3 Classification of Atlantic halibut unique sequences

Classification	Classification Method	GO source	Number of Sequences
Unclassified	No BLAST hit		1016
Ribosomal RNA	rRNA hit		28
Unassigned protein	BLAST hit >e-10 to unknown protein		824
Unknown EST	BLAST hit >e-10 to unknown EST		802
Functionally annotated protein	BLAST hit >e-10 to known protein		5040
	Informative terms			4786
	Domain name-containing protein			254
	Gene Ontology (107)				3878
		AutoFACT				1640
		Goblet				1736
		InterPro				605
	KEGG (185)				578
	COG (22)				1191
Total			7710	5040

Numbers of sequences associated with AutoFact classification. The method of classifying functionally annotated proteins is indicated and the numbers of categories identified by GO, KEGG and COG are given in brackets. GO classifications were obtained using Goblet and Interpro information as well as AutoFACT.

ISSN: 1471-2164