Characterization of microRNA expression profiles in normal human tissues

Liang, Yu; Ridzon, Dana; Wong, Linda; Chen, Caifu

doi:10.1186/1471-2164-8-166

BMC Genomics

Table 1 Genomic locations of miRNAs in the 8 differentially expressed groups.

From: Characterization of microRNA expression profiles in normal human tissues

	Ch	Start	End	Strand	p value*
Group I
hsa-mir-133b	6	52121680	52121798	+
hsa-mir-133a-1	18	17659657	17659744	-
hsa-mir-1-2	18	17662963	17663047	-	1.77 × 10^-13
hsa-mir-1-1	20	60561958	60562028	+
hsa-mir-133a-2	20	60572564	60572665	+
Group II
hsa-mir-200b	1	1092347	1092441	+
hsa-mir-200a	1	1093106	1093195	+
hsa-mir-194-1	1	218358122	218358206	-
hsa-mir-375	2	219574611	219574674	-
hsa-mir-31	9	21502114	21502184	-
hsa-mir-192	11	64415185	64415294	-	0.000039
hsa-mir-194-2	11	64415403	64415487	-
hsa-mir-200c	12	6943123	6943190	+
hsa-mir-141	12	6943521	6943615	+
hsa-mir-203	14	103653495	103653604	+
Group III
hsa-mir-219-1	6	33283590	33283699	+
hsa-mir-129-1	7	127635161	127635232	+
hsa-mir-219-2	9	130194718	130194814	-
hsa-mir-129-2	11	43559520	43559609	+
hsa-mir-330	19	50834092	50834185	-
Group IVa
hsa-mir-124a-1	8	9798308	9798392	-
hsa-mir-124a-2	8	65454260	65454368	+
hsa-mir-124a-3	20	61280297	61280383	+
Group IVb
hsa-mir-214	1	170374561	170374670	-	0.000016
hsa-mir-199a-2	1	170380298	170380407	-
hsa-mir-143	5	148788674	148788779	+
hsa-mir-199b	9	130046821	130046930	-
hsa-mir-10a	17	44012199	44012308	-
hsa-mir-199a-1	19	10789102	10789172	-
Group V
hsa-mir-367	4	113788479	113788546	-
hsa-mir-302d	4	113788609	113788676	-
hsa-mir-302a	4	113788788	113788856	-	7.3 × 10^-12
hsa-mir-302c	4	113788968	113789035	-
hsa-mir-302b	4	113789090	113789162	-
hsa-mir-499	20	33041840	33041961	+
Group VI
hsa-mir-122a	18	54269286	54269370	+
Group VIIa
hsa-mir-381	14	100582010	100582084	+
hsa-mir-154	14	100595845	100595928	+
hsa-mir-377	14	100598140	100598208	+
hsa-mir-498	19	58869263	58869386	+
hsa-mir-526b	19	58889459	58889541	+
hsa-mir-519b	19	58890279	58890359	+
hsa-mir-526a-1	19	58901318	58901402	+
hsa-mir-524	19	58906068	58906154	+
hsa-mir-517a	19	58907334	58907420	+
hsa-mir-517b	19	58916142	58916208	+
hsa-mir-516-3	19	58920508	58920592	+	0.026
hsa-mir-526a-2	19	58921988	58922052	+
hsa-mir-516-4	19	58931911	58932000	+
hsa-mir-517c	19	58936379	58936473	+
hsa-mir-527	19	58949084	58949168	+
hsa-mir-516-1	19	58951807	58951896	+
hsa-mir-516-2	19	58956199	58956288	+
hsa-mir-371	19	58982741	58982807	+
hsa-mir-503	X	133508024	133508094	-
Group VIIb
hsa-mir-184	15	77289185	77289268	+
hsa-mir-520e	19	58870777	58870863	+
hsa-mir-519e	19	58875006	58875089	+
hsa-mir-520f	19	58877225	58877311	+
hsa-mir-520a	19	58885947	58886031	+
hsa-mir-526b	19	58889459	58889541	+
hsa-mir-523	19	58893451	58893537	+
hsa-mir-520b	19	58896293	58896353	+
hsa-mir-526a-1	19	58901318	58901402	+
hsa-mir-520c	19	58902519	58902605	+	0.026
hsa-mir-518c	19	58903801	58903901	+
hsa-mir-524	19	58906068	58906154	+
hsa-mir-521-2	19	58911660	58911746	+
hsa-mir-526a-2	19	58921988	58922052	+
hsa-mir-518a-1	19	58926072	58926156	+
hsa-mir-518d	19	58929943	58930029	+
hsa-mir-518a-2	19	58934399	58934485	+
hsa-mir-521-1	19	58943702	58943788	+
hsa-mir-372	19	58982956	58983022	+
hsa-mir-373	19	58983771	58983839	+
hsa-mir-450-1	X	133502037	133502127	-
hsa-mir-450-2	X	133502204	133502303	-
Group VIIc
hsa-mir-512-1	19	58861745	58861828	+
hsa-mir-512-2	19	58864223	58864320	+
hsa-mir-515-1	19	58874069	58874151	+
hsa-mir-519e	19	58875006	58875089	+
hsa-mir-515-2	19	58880075	58880157	+
hsa-mir-519c	19	58881535	58881621	+
hsa-mir-520a	19	58885947	58886031	+
hsa-mir-525	19	58892599	58892683	+
hsa-mir-518f	19	58895081	58895167	+
hsa-mir-518b	19	58897803	58897885	+
hsa-mir-518c	19	58903801	58903901	+
hsa-mir-517a	19	58907334	58907420	+
hsa-mir-519d	19	58908413	58908500	+	0.026
hsa-mir-520d	19	58915162	58915248	+
hsa-mir-517b	19	58916142	58916208	+
hsa-mir-520g	19	58917232	58917321	+
hsa-mir-516-3	19	58920508	58920592	+
hsa-mir-518e	19	58924904	58924991	+
hsa-mir-518a-1	19	58926072	58926156	+
hsa-mir-516-4	19	58931911	58932000	+
hsa-mir-518a-2	19	58934399	58934485	+
hsa-mir-520h	19	58937578	58937665	+
hsa-mir-522	19	58946277	58946363	+
hsa-mir-516-1	19	58951807	58951896	+
hsa-mir-516-2	19	58956199	58956288	+
Group VIIIa
hsa-mir-34b	11	110888873	110888956	+
hsa-mir-513-1	X	146102673	146102801	-
hsa-mir-513-2	X	146115036	146115162	-	0.00001
hsa-mir-507	X	146120194	146120287	-
hsa-mir-510	X	146161545	146161618	-
Group VIIIb
hsa-mir-449	5	54502117	54502207	-
hsa-mir-449b	5	54502231	54502327	-
hsa-mir-202	10	134911006	134911115	-
hsa-mir-34b	11	110888873	110888956	+
hsa-mir-34c	11	110889374	110889450	+
hsa-mir-506	X	146119930	146120053	-
hsa-mir-508	X	146126123	146126237	-
hsa-mir-509	X	146149742	146149835	-	0.00001
hsa-mir-514-1	X	146168457	146168554	-
hsa-mir-514-2	X	146171153	146171240	-
hsa-mir-514-3	X	146173851	146173938	-

*Whether each expression group was enriched in miRNAs located in genomic clusters was evaluated by Chi test. miRNAs in different subgroups were analyzed together in one test as long as they are located within a genomic cluster.

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ISSN: 1471-2164

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