Table 7 Number and maximum length of SSRs present in twenty-six land plant chloroplast genomes.
| Â | Â | Â | 8,8,9 SSRs (number) | 10, 10,12 SSRs (number) | Â | Â | Â | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Taxon | Accession Number | Genome size | mono | di | tri | total | mono | di | tri | total | max mono (units) | max di (units) | max tri (units) |
Huperzia lucidula | NC_006861 | 154,373 | 147 | 34 | 80 | 261 | 25 | 10 | 7 | 42 | 15 | 9 | 10 |
Psilotum nudum | NC_003386 | 138,829 | 111 | 35 | 58 | 204 | 28 | 12 | 3 | 43 | 17 | 6 | 5 |
Adiantum capillus-veneris | NC_004766 | 150,568 | 146 | 32 | 39 | 217 | 94 | 4 | 2 | 100 | 19 | 6 | 4 |
Pinus thunbergii | NC_001631 | 119,707 | 74 | 36 | 42 | 152 | 20 | 5 | 0 | 25 | 17 | 7 | 3 |
Pinus koraiensis | NC_004677 | 116,866 | 77 | 38 | 39 | 154 | 36 | 6 | 0 | 42 | 23 | 9 | 3 |
Oryza nivara | NC_005973 | 134,494 | 91 | 20 | 42 | 153 | 10 | 4 | 3 | 17 | 13 | 5 | 4 |
Oryza sativa indica 93-11 | NC_008155 | 134,496 | 94 | 20 | 42 | 156 | 9 | 4 | 3 | 16 | 16 | 5 | 4 |
O. sativa japonica Nipponbare | AY522330 | 134,551 | 94 | 20 | 42 | 156 | 11 | 4 | 3 | 18 | 17 | 5 | 4 |
O. sativa japonica PA64S | AY522331 | 134,551 | 94 | 20 | 42 | 156 | 11 | 4 | 3 | 18 | 17 | 5 | 4 |
Saccharum officinarum | NC_006084 | 141,182 | 128 | 26 | 47 | 201 | 32 | 5 | 1 | 38 | 15 | 5 | 4 |
Zea mays | NC_001666 | 140,384 | 121 | 29 | 52 | 202 | 34 | 6 | 2 | 42 | 18 | 6 | 5 |
Triticum aestivum | NC_002762 | 134,545 | 116 | 33 | 43 | 192 | 24 | 8 | 3 | 35 | 15 | 6 | 5 |
Nuphar advena | NC_008788 | 160,866 | 71 | 65 | 84 | 220 | 19 | 23 | 10 | 52 | 16 | 11 | 5 |
Nymphaea alba | NC_006050 | 159,939 | 63 | 60 | 73 | 196 | 15 | 4 | 4 | 23 | 16 | 5 | 4 |
Amborella trichopoda | NC_005086 | 162,686 | 101 | 47 | 57 | 205 | 35 | 8 | 6 | 49 | 15 | 9 | 4 |
Calycanthus fertilis | NC_004993 | 153,337 | 105 | 35 | 93 | 233 | 14 | 8 | 4 | 26 | 13 | 8 | 4 |
Ranunculus macranthus | NC_008796 | 155,158 | 146 | 60 | 55 | 261 | 28 | 9 | 3 | 40 | 16 | 8 | 5 |
Arabidopsis thaliana | NC_000932 | 154,478 | 234 | 83 | 61 | 378 | 69 | 18 | 6 | 93 | 17 | 8 | 5 |
Oenothera elata | NC_002693 | 163,935 | 155 | 48 | 68 | 271 | 56 | 6 | 8 | 70 | 24 | 6 | 4 |
Panax ginseng | NC_006290 | 156,318 | 92 | 39 | 60 | 191 | 18 | 5 | 3 | 26 | 13 | 7 | 4 |
Nicotiana tabacum | NC_001879 | 155,939 | 116 | 41 | 73 | 230 | 38 | 7 | 5 | 50 | 17 | 5 | 4 |
Atropa belladonna | NC_004561 | 156,687 | 116 | 46 | 74 | 236 | 39 | 10 | 2 | 51 | 17 | 6 | 4 |
Spinacia oleracea | NC_002202 | 150,725 | 146 | 55 | 64 | 265 | 40 | 9 | 4 | 53 | 12 | 7 | 4 |
Epifagus virginiana | NC_001568 | 70,028 | 106 | 36 | 50 | 192 | 25 | 16 | 4 | 45 | 15 | 10 | 5 |
Lotus japonicus | NC_002694 | 150,519 | 236 | 80 | 77 | 393 | 76 | 27 | 6 | 109 | 16 | 11 | 5 |
Medicago truncatula | NC_003119 | 124,033 | 190 | 63 | 93 | 346 | 76 | 28 | 9 | 113 | 18 | 7 | 6 |