Table 1 List of conserved sequence motifs that are enriched in the promoters (-1,000, -1 region) of 117 early response genes.
Core Motif | Transcription Factor | Database Annotation | % Occurrence | TIC* | E-value |
|---|---|---|---|---|---|
TTTC | GAMyb | Pyrimidine box (barley) | 87 | 10.00 | 9e-0004 |
TGACG | bZIP, TGA-type | as1/ocs element (tobacco, Arabidopsis) Auxin response element (soybean) | 84 | 8.29 | 4e-003 |
GATGA | bZIP, TGA-type | Xenobiotic stress element (tobacco) | 84 | 9.07 | 2e-003 |
TTGATC | WRKY bZIP, TGA-type | W-box (Arabidopsis) as1/ocs element (Arabidopsis) TGA1a factor (tobacco) | 79 | 10.24 | 9e-004 |
TCCCAT | ARD | Auxin-response element (soybean) | 77 | 8.88 | 4e-004 |
CAAACC | Myb, GARE-type | GA response element (barley) ABRE (Brassica) | 72 | 10.43 | 8e-004 |
CAACAA | Myb2 | MybR (rice, barley) | 71 | 9.50 | 1e-003 |
CACGTG | bZIP | G-box (soybean, tobacco) ABRE (maize, barley) | 71 | 8.66 | 8e-004 |
CAACCT | Myc/AP2 | MycR (rice) | 70 | 9.59 | 2e-003 |
ATCCGG | Myb, GARE-type | GA-response element (barley) | 69 | 8.91 | 3e-003 |
CTCGC | bZIP | ABRE (rice) | 67 | 9.20 | 2e-003 |
GCGCCGC | AP2/EREBP | GCC-box (tobacco) | 66 | 12.80 | 2e-004 |
AACCAA | AtMyb2 | Dehydration element (Arabidopsis) | 63 | 10.86 | 9e-004 |
GCCGCCG | AP2/EREBP | GCC box (Arabidopsis) ABA response element (maize) Ethylene response element (Arabidopsis) | 61 | 12.64 | 7e-004 |
GCGAC | AP2/EREBP, CBF/DREB | CRT/DRE-like (rice, Arabidopsis) | 61 | 9.24 | 2e-003 |
ACAAAAT | GAMyb | GAMyb (rice, barley) | 46 | 11.93 | 4e-004 |