From: New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria
Organism | References | Closed-Curated annotation | Genbank | Coordinates (length) | Flank One | Flank Two | % genome AT content | % ori AT content |
---|---|---|---|---|---|---|---|---|
Wolbachia pipientis w Mel_A | [15] | Y | NC_002978 | 988364..988765 (402 bp) | WD_1027/COG1253 (CBS) | WD_1028/hemE | 64.77 | 75.87 |
Wolbachia pipientis w Bm_D | [14] | Y | NC_006833 | 1079740..110 (455 bp) | Wbm_0809/COG1253 (CBS) | Wbm_0001/hemE | 65.82 | 69.89 |
Wolbachia pipientis w Ana_A | [43] | N | NZ_AAGB00000000 | N/A (402 bp) | WwAna0355/COG1253 (CBS) | WwAna0353/hemE | N/A | 75.87 |
Wolbachia pipientis w Sim_A | [43] | N | NZ_AAGC00000000 | N/A (396 bp) | WwSim0491/COG1253 (CBS) | WwSim0492/hemE | N/A | 75.51 |
Wolbachia pipientis w Wil_A | [44] | N | N/A | N/A (402 bp) | COG1253 (CBS) | hemE | N/A | 75.49 |
Wolbachia pipientis w Pip_B | [45] | N | N/A | N/A (402 bp) | COG1253 (CBS) | hemE | N/A | 79.17 |
Ehrlichia chaffeensis Arkansas | [36] | Y | CP000236 | 26939..27361 (423 bp) | ECH_0030/hemE | ECH_0031/COG1253 | 69.90 | 74.70 |
Ehrlichia ruminantium Welgevonden | [35] | Y | NC_005295 | 23003..23424 (422 bp) | Erum_0180/hemE | Erum_0190/COG1253 | 72.52 | 75.19 |
Ehrlichia ruminantium Gardel | [88] | Y | NC_006831 | 4149..4564 (416 bp) | ERGA_CDS_00050/hemE | ERGA_CDS_00060/COG1253 | 72.49 | 75.48 |
Ehrlichia canis Jake | NC_007354 | Y | NC_007354 | 11395..11819 (425 bp) | Ecaj_0010/hemE | Ecaj_0011/COG1253 | 71.04 | 73.88 |
Anaplasma marginale St. Maries | [34] | Y | NC_004842 | 1147944..1148563 (620 bp) | AM_1301/hemE | AM_1303/COG1253 | 50.24 | 63.71 |
Anaplasma phagocytophilum HZ | [36] | Y | CP000235 | 20557..20941 (385 bp) | APH_0020/hemE | APH_0021/COG1253 | 58.36 | 71.43 |
Neorickettsia sennetsu Miyayama | [36] | Y | CP000237 | 855136..855541 (406 bp) | NSE_0967/phage uncharacterized protein | NSE_0968/hemE | 58.92 | 71.92 |
 | [36] | Y | CP000237 | 267777..268329 (553 bp) | NSE_0324/hypothetical protein | NSE_0327/COG1253 | 58.92 | 58.22 |
Rickettsia typhi Wilmington | [75] | Y | NC_006142 | 1111114..1111496 (383 bp) | RT_0877/hemE | RT_0001/COG1806 | 71.08 | 82.25 |
Rickettsia prowazekii Madrid E | [73] | Y | NC_000963 | 1111140..1111523 (384 bp) | RP_885/hemE | RP_001/COG1806 | 71.00 | 82.55 |
Rickettsia conorii Malish 7 | [74] | Y | NC_003103 | 1268361..1268755 (395 bp) | RC_1374/hemE | RC_0001/COG1806 | 67.56 | 81.52 |
Rickettsia felis URRWXCal2 | [76] | Y | NC_007109 | 1484753..1485148 (396 bp) | RF_1400/hemE | RF_0001/COG1806 | 67.55 | 82.83 |
Caulobacter crescentus CB15 | [89] | Y | NC_002696 | 4016703..159 (404 bp) | CC_3763/hemE | CC_0001/COG1806 | 32.80 | 43.56 |