From: Profiling of chicken adipose tissue gene expression by genome array
Probe set ID | Fold Change (fat/lean) | T-test P-value | SAM q-value | Chr. Location | GenBank ID | Gene name |
---|---|---|---|---|---|---|
Lipid Metabolism | ||||||
GgaAffx.24836.1.S1_at | 2.5 | 0.001 | 0.27 | chr1: 100587339–100699482 | XM_416725 | propionyl-Coenzyme A-carboxylase |
GgaAffx.22084.1.S1_at | 1.8 | 0 | 0.27 | chr11: 59355–69450 | No record | lysophospholipase 3 |
Gga.150.1.S1_at | 4.2 | 0.003 | 0.279 | chr1: 167849591–167950628 | NM_204252 | fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) |
GgaAffx.8095.1.S1_at | 1.6 | 0.006 | 0.324 | chr1: 52216531–52245657 | XM_416329 | N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits |
Gga.879.1.S1_at | -6.7 | 0.001 | 0.27 | chr11: 16001674–16006281 | NM_205526 | N-acetyltransferase |
Gga.19791.1.S1_s_at | 1.9 | 0.003 | 0.279 | chr2: 128797196–128808892 | XM_418378 | low density lipoprotein-related protein 12 |
GgaAffx.9942.1.S1_at | 2.2 | 0.001 | 0.27 | chr4: 81245396–81273837 | XM_420814 | acyl-CoA oxidase |
GgaAffx.20938.1.S1_at | 1.3 | 0.007 | 0.329 | chr5: 15830450–15831289 | NM_001031187 | pyruvate dehydrogenase complex, component X similar to glycerol-3-phosphate dehydrogenase 2; |
GgaAffx.23939.1.S1_s_at | 7.5 | 0.005 | 0.301 | chr7: 36699654–36750512 | XM_422168 | glycerol phosphate dehydrogenase 1, mitochondrial; FAD-linked glycerol-3-phosphate dehydrogenase |
Gga.17037.1.S1_s_at | 1.6 | 0.005 | 0.308 | chrZ: 15403025–15434404 | NM_001031422 | phosphatidylinositol-4-phosphate 5-kinase, type I, beta |
GgaAffx.5721.1.S1_at | 2.1 | 0.001 | 0.27 | chr3: 9206064–9214413 | NM_001031039 | lysocardiolipin acyltransferase |
Energy Metabolism | ||||||
Gga.11825.1.S1_at | 3.2 | 0.003 | 0.274 | chr1: 109208120–109232230 | XM_416788 | glycerol kinase |
Gga.9828.1.S1_a_at | -3.2 | 0 | 0.27 | chr1: 79394222–79396236 | XM_416612 | thioredoxin-like 4B |
GgaAffx.4389.1.S1_at | -1.6 | 0.004 | 0.284 | chr10: 17276047–17283495 | XM_425083 | 5-oxoprolyl-peptidase |
GgaAffx.2243.2.S1_at | 2.3 | 0.002 | 0.27 | chr26: 3685185–3702282 | XM_418055 | ATPase, Ca++ transporting, plasma membrane 4 |
Gga.19534.1.S1_at | 8.3 | 0.002 | 0.27 | chr9: 21559961–21563214 | ">XM_422814"> | beta 1,3-galactosyltransferase, polypeptide 3 |
Tumorigenesis | ||||||
Gga.6519.1.S1_s_at | -2.2 | 0.005 | 0.303 | chr1: 21687403–21784133 | XM_416014 | suppression of tumorigenicity 7 |
Gga.15871.1.S1_at | -1.6 | 0.006 | 0.323 | chr19: 8852117–8853712 | CR387378 | Tumor necrosis factor, alpha-induced protein 1 |
Gga.12058.1.S1_at | 2.1 | 0.003 | 0.279 | chr2: 135144222–135145306 | XM_418407 | similar to cylindromatosis (turban tumor syndrome); cylindromatosis 1, turban tumor syndrome |
GgaAffx.22987.1.S1_at | -1.6 | 0.002 | 0.27 | chr5: 26523325–26529591 | XM_421205 | thrombospondin 1 |
Gga.654.1.S2_at | 1.8 | 0.001 | 0.27 | chr6: 4237546–4314610 | NM_205190 | ret proto-oncogene |
Signal Transduction | ||||||
GgaAffx.3663.1.S1_at | -5.3 | 0.003 | 0.278 | chr14: 8517712–8520620 | XM_414857 | similar to CASK interacting protein 1 |
Gga.12193.1.S1_a_at | 9.0 | 0.007 | 0.324 | chr2: 47562155–47581032 | XM_418851 | G-substrate |
Gga.9510.1.S1_at | 1.9 | 0.007 | 0.329 | chr22:537865–569787 | NM_001030886 | protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform |
Gga.1761.2.S1_at | 13.8 | 0.002 | 0.27 | chr3:107742849–107744353 | XM_420066 | similar to G-protein coupled receptor 116 |
GgaAffx.4775.1.S1_s_at | 4.0 | 0.002 | 0.27 | chr4:11707299–11760821 | XM_420292 | similar to receptor tyrosine kinase flk-1/VEGFR-2 |
Gga.807.1.S1_at | 1.9 | 0.007 | 0.324 | chr4:65686004–65686340 | NM_001004368 | kinase insert domain receptor (a type III receptor tyrosine kinase) (KDR) |
Gga.12481.1.S1_s_at | 1.9 | 0.007 | 0.327 | chr7:27843665–27860405 | NM_001012920 | protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b |
Gga.6653.1.S1_at | -1.7 | 0.004 | 0.281 | chr11:17426083–17429654 | NM_001030576 | hepatic nuclear factor 4beta similar to suppressor of cytokine signaling 7; SH2 |
GgaAffx.8729.1.S1_s_at | -10.0 | 0 | 0.27 | chrUn:137141542–137146475 | XM_423895 | domain containing SOCS box protein SOCS7; Nck, Ash and phospholipase C binding protein similar to prostaglandin E receptor 3; Rat kidney |
GgaAffx.7207.1.S1_at | 5.7 | 0.002 | 0.27 | chr8:29278163–29285596 | XM_426672 | prostaglandin EP3 receptor (alternative splicing results in two different receptors EP3a and EP3b); |
Gga.10737.1.S1_s_at | 1.7 | 0.005 | 0.305 | chr7:2212065–2223469 | XM_421856 | similar to Nck-associated protein 1 (NAP 1) (p125Nap1) (Membrane-associated protein HEM- 2) |
GgaAffx.8719.1.S1_at | 7.2 | 0.002 | 0.27 | chr4:64869759–64912904 | XM_420693 | similar to regulator protein p122-RhoGAP – rat |
Gga.12408.3.S1_a_at | 2.7 | 0.005 | 0.305 | chr5:41375030–41383659 | NM_204357 | ataxin 3 |
Gga.323.1.S1_at | 3.6 | 0.001 | 0.27 | chrUn:147862083–147882739 | NM_204801 | tetraspanin 18 |
Immunity | ||||||
Gga.13806.1.S1_at | -4.8 | 0.004 | 0.293 | chr7:7186627–7189336 | NM_204240 | adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) |
Gga.18504.1.S1_at | 6.9 | 0.003 | 0.278 | chr5:5440836–5460278 | CR390783 | parvin, alpha |
Gga.698.1.S1_at | 1.6 | 0.004 | 0.293 | chr6:14652488–14704778 | NM_205441 | vinculin |
Gga.11155.1.S1_s_at | 1.8 | 0.001 | 0.27 | chr4:15341234–15354773 | XM_420331 | stromal antigen 2 |
Others | ||||||
Gga.11258.1.S1_at | 1.7 | 0.001 | 0.27 | chr1:170378838–170513289 | XM_417140 | EF-hand domain family, member A1 |
Gga.15085.2.S1_s_at | 6.6 | 0.001 | 0.27 | chr1:172635432–172645292 | XM_417167 | CWF19-like 2, cell cycle control (S. pombe) |
GgaAffx.5969.1.S1_at | 6.2 | 0.002 | 0.27 | chr1:24071401–24234367 | XM_416024 | similar to dedicator of cytokinesis 4 |
GgaAffx.12338.1.S1_s_at | 3.9 | 0.001 | 0.27 | chr15:7114454–7122253 | NM_001030665 | tuftelin interacting protein 11 |
GgaAffx.25724.1.S1_s_at | 7.4 | 0.002 | 0.27 | chr18:5638526–5691321 | XM_415648 | similar to Stxbp4 protein |
GgaAffx.6849.1.S1_at | 4.0 | 0.004 | 0.285 | chr3:34026676–34050970 | XM_419554 | similar to endoplasmic reticulum oxidoreductin 1- Lbeta |
GgaAffx.22370.3.S1_s_at | 4.3 | 0 | 0.27 | chr3:1260579–1276286 | XM_420116 | similar to chromosome 17 open reading frame 28; downregulated in multiple cancer 1 |
GgaAffx.6334.2.S1_at | 3.9 | 0.004 | 0.293 | chr4:33725503–33732138 | XM_420444 | SH3 domain protein D19 |
GgaAffx.22790.1.S1_s_at | 6.1 | 0.003 | 0.279 | chr6:26875122–27047419 | XM_421771 | similar to actin-binding LIM protein 1 medium isoform |
GgaAffx.26704.1.S1_at | -5.2 | 0.001 | 0.27 | chr8:14622890–14638649 | XM_422345 | similar to abhydrolase domain containing 7 |
Gga.16560.1.S1_at | 3.3 | 0.003 | 0.279 | chrE26C13:1961–7813 | XM_422853 | myeloid cell leukemia sequence 1 (BCL2-related) |
Gga.16020.1.S1_at | 2.2 | 0 | 0.27 | chrUn:92422001–92432256 | NM_001031613 | similar to Death-associated protein kinase 1 |