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Table 5 Differentially expressed genes by microarray analysis

From: Profiling of chicken adipose tissue gene expression by genome array

Probe set ID Fold Change (fat/lean) T-test P-value SAM q-value Chr. Location GenBank ID Gene name
Lipid Metabolism       
GgaAffx.24836.1.S1_at 2.5 0.001 0.27 chr1: 100587339–100699482 XM_416725 propionyl-Coenzyme A-carboxylase
GgaAffx.22084.1.S1_at 1.8 0 0.27 chr11: 59355–69450 No record lysophospholipase 3
Gga.150.1.S1_at 4.2 0.003 0.279 chr1: 167849591–167950628 NM_204252 fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)
GgaAffx.8095.1.S1_at 1.6 0.006 0.324 chr1: 52216531–52245657 XM_416329 N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
Gga.879.1.S1_at -6.7 0.001 0.27 chr11: 16001674–16006281 NM_205526 N-acetyltransferase
Gga.19791.1.S1_s_at 1.9 0.003 0.279 chr2: 128797196–128808892 XM_418378 low density lipoprotein-related protein 12
GgaAffx.9942.1.S1_at 2.2 0.001 0.27 chr4: 81245396–81273837 XM_420814 acyl-CoA oxidase
GgaAffx.20938.1.S1_at 1.3 0.007 0.329 chr5: 15830450–15831289 NM_001031187 pyruvate dehydrogenase complex, component X similar to glycerol-3-phosphate dehydrogenase 2;
GgaAffx.23939.1.S1_s_at 7.5 0.005 0.301 chr7: 36699654–36750512 XM_422168 glycerol phosphate dehydrogenase 1, mitochondrial; FAD-linked glycerol-3-phosphate dehydrogenase
Gga.17037.1.S1_s_at 1.6 0.005 0.308 chrZ: 15403025–15434404 NM_001031422 phosphatidylinositol-4-phosphate 5-kinase, type I, beta
GgaAffx.5721.1.S1_at 2.1 0.001 0.27 chr3: 9206064–9214413 NM_001031039 lysocardiolipin acyltransferase
Energy Metabolism       
Gga.11825.1.S1_at 3.2 0.003 0.274 chr1: 109208120–109232230 XM_416788 glycerol kinase
Gga.9828.1.S1_a_at -3.2 0 0.27 chr1: 79394222–79396236 XM_416612 thioredoxin-like 4B
GgaAffx.4389.1.S1_at -1.6 0.004 0.284 chr10: 17276047–17283495 XM_425083 5-oxoprolyl-peptidase
GgaAffx.2243.2.S1_at 2.3 0.002 0.27 chr26: 3685185–3702282 XM_418055 ATPase, Ca++ transporting, plasma membrane 4
Gga.19534.1.S1_at 8.3 0.002 0.27 chr9: 21559961–21563214 ">XM_422814"> beta 1,3-galactosyltransferase, polypeptide 3
Tumorigenesis       
Gga.6519.1.S1_s_at -2.2 0.005 0.303 chr1: 21687403–21784133 XM_416014 suppression of tumorigenicity 7
Gga.15871.1.S1_at -1.6 0.006 0.323 chr19: 8852117–8853712 CR387378 Tumor necrosis factor, alpha-induced protein 1
Gga.12058.1.S1_at 2.1 0.003 0.279 chr2: 135144222–135145306 XM_418407 similar to cylindromatosis (turban tumor syndrome); cylindromatosis 1, turban tumor syndrome
GgaAffx.22987.1.S1_at -1.6 0.002 0.27 chr5: 26523325–26529591 XM_421205 thrombospondin 1
Gga.654.1.S2_at 1.8 0.001 0.27 chr6: 4237546–4314610 NM_205190 ret proto-oncogene
Signal Transduction       
GgaAffx.3663.1.S1_at -5.3 0.003 0.278 chr14: 8517712–8520620 XM_414857 similar to CASK interacting protein 1
Gga.12193.1.S1_a_at 9.0 0.007 0.324 chr2: 47562155–47581032 XM_418851 G-substrate
Gga.9510.1.S1_at 1.9 0.007 0.329 chr22:537865–569787 NM_001030886 protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
Gga.1761.2.S1_at 13.8 0.002 0.27 chr3:107742849–107744353 XM_420066 similar to G-protein coupled receptor 116
GgaAffx.4775.1.S1_s_at 4.0 0.002 0.27 chr4:11707299–11760821 XM_420292 similar to receptor tyrosine kinase flk-1/VEGFR-2
Gga.807.1.S1_at 1.9 0.007 0.324 chr4:65686004–65686340 NM_001004368 kinase insert domain receptor (a type III receptor tyrosine kinase) (KDR)
Gga.12481.1.S1_s_at 1.9 0.007 0.327 chr7:27843665–27860405 NM_001012920 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b
Gga.6653.1.S1_at -1.7 0.004 0.281 chr11:17426083–17429654 NM_001030576 hepatic nuclear factor 4beta similar to suppressor of cytokine signaling 7; SH2
GgaAffx.8729.1.S1_s_at -10.0 0 0.27 chrUn:137141542–137146475 XM_423895 domain containing SOCS box protein SOCS7; Nck, Ash and phospholipase C binding protein similar to prostaglandin E receptor 3; Rat kidney
GgaAffx.7207.1.S1_at 5.7 0.002 0.27 chr8:29278163–29285596 XM_426672 prostaglandin EP3 receptor (alternative splicing results in two different receptors EP3a and EP3b);
Gga.10737.1.S1_s_at 1.7 0.005 0.305 chr7:2212065–2223469 XM_421856 similar to Nck-associated protein 1 (NAP 1) (p125Nap1) (Membrane-associated protein HEM- 2)
GgaAffx.8719.1.S1_at 7.2 0.002 0.27 chr4:64869759–64912904 XM_420693 similar to regulator protein p122-RhoGAP – rat
Gga.12408.3.S1_a_at 2.7 0.005 0.305 chr5:41375030–41383659 NM_204357 ataxin 3
Gga.323.1.S1_at 3.6 0.001 0.27 chrUn:147862083–147882739 NM_204801 tetraspanin 18
Immunity       
Gga.13806.1.S1_at -4.8 0.004 0.293 chr7:7186627–7189336 NM_204240 adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)
Gga.18504.1.S1_at 6.9 0.003 0.278 chr5:5440836–5460278 CR390783 parvin, alpha
Gga.698.1.S1_at 1.6 0.004 0.293 chr6:14652488–14704778 NM_205441 vinculin
Gga.11155.1.S1_s_at 1.8 0.001 0.27 chr4:15341234–15354773 XM_420331 stromal antigen 2
Others       
Gga.11258.1.S1_at 1.7 0.001 0.27 chr1:170378838–170513289 XM_417140 EF-hand domain family, member A1
Gga.15085.2.S1_s_at 6.6 0.001 0.27 chr1:172635432–172645292 XM_417167 CWF19-like 2, cell cycle control (S. pombe)
GgaAffx.5969.1.S1_at 6.2 0.002 0.27 chr1:24071401–24234367 XM_416024 similar to dedicator of cytokinesis 4
GgaAffx.12338.1.S1_s_at 3.9 0.001 0.27 chr15:7114454–7122253 NM_001030665 tuftelin interacting protein 11
GgaAffx.25724.1.S1_s_at 7.4 0.002 0.27 chr18:5638526–5691321 XM_415648 similar to Stxbp4 protein
GgaAffx.6849.1.S1_at 4.0 0.004 0.285 chr3:34026676–34050970 XM_419554 similar to endoplasmic reticulum oxidoreductin 1- Lbeta
GgaAffx.22370.3.S1_s_at 4.3 0 0.27 chr3:1260579–1276286 XM_420116 similar to chromosome 17 open reading frame 28; downregulated in multiple cancer 1
GgaAffx.6334.2.S1_at 3.9 0.004 0.293 chr4:33725503–33732138 XM_420444 SH3 domain protein D19
GgaAffx.22790.1.S1_s_at 6.1 0.003 0.279 chr6:26875122–27047419 XM_421771 similar to actin-binding LIM protein 1 medium isoform
GgaAffx.26704.1.S1_at -5.2 0.001 0.27 chr8:14622890–14638649 XM_422345 similar to abhydrolase domain containing 7
Gga.16560.1.S1_at 3.3 0.003 0.279 chrE26C13:1961–7813 XM_422853 myeloid cell leukemia sequence 1 (BCL2-related)
Gga.16020.1.S1_at 2.2 0 0.27 chrUn:92422001–92432256 NM_001031613 similar to Death-associated protein kinase 1