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Table 5 Differentially expressed genes by microarray analysis

From: Profiling of chicken adipose tissue gene expression by genome array

Probe set ID

Fold Change (fat/lean)

T-test P-value

SAM q-value

Chr. Location

GenBank ID

Gene name

Lipid Metabolism

      

GgaAffx.24836.1.S1_at

2.5

0.001

0.27

chr1: 100587339–100699482

XM_416725

propionyl-Coenzyme A-carboxylase

GgaAffx.22084.1.S1_at

1.8

0

0.27

chr11: 59355–69450

No record

lysophospholipase 3

Gga.150.1.S1_at

4.2

0.003

0.279

chr1: 167849591–167950628

NM_204252

fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)

GgaAffx.8095.1.S1_at

1.6

0.006

0.324

chr1: 52216531–52245657

XM_416329

N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits

Gga.879.1.S1_at

-6.7

0.001

0.27

chr11: 16001674–16006281

NM_205526

N-acetyltransferase

Gga.19791.1.S1_s_at

1.9

0.003

0.279

chr2: 128797196–128808892

XM_418378

low density lipoprotein-related protein 12

GgaAffx.9942.1.S1_at

2.2

0.001

0.27

chr4: 81245396–81273837

XM_420814

acyl-CoA oxidase

GgaAffx.20938.1.S1_at

1.3

0.007

0.329

chr5: 15830450–15831289

NM_001031187

pyruvate dehydrogenase complex, component X similar to glycerol-3-phosphate dehydrogenase 2;

GgaAffx.23939.1.S1_s_at

7.5

0.005

0.301

chr7: 36699654–36750512

XM_422168

glycerol phosphate dehydrogenase 1, mitochondrial; FAD-linked glycerol-3-phosphate dehydrogenase

Gga.17037.1.S1_s_at

1.6

0.005

0.308

chrZ: 15403025–15434404

NM_001031422

phosphatidylinositol-4-phosphate 5-kinase, type I, beta

GgaAffx.5721.1.S1_at

2.1

0.001

0.27

chr3: 9206064–9214413

NM_001031039

lysocardiolipin acyltransferase

Energy Metabolism

      

Gga.11825.1.S1_at

3.2

0.003

0.274

chr1: 109208120–109232230

XM_416788

glycerol kinase

Gga.9828.1.S1_a_at

-3.2

0

0.27

chr1: 79394222–79396236

XM_416612

thioredoxin-like 4B

GgaAffx.4389.1.S1_at

-1.6

0.004

0.284

chr10: 17276047–17283495

XM_425083

5-oxoprolyl-peptidase

GgaAffx.2243.2.S1_at

2.3

0.002

0.27

chr26: 3685185–3702282

XM_418055

ATPase, Ca++ transporting, plasma membrane 4

Gga.19534.1.S1_at

8.3

0.002

0.27

chr9: 21559961–21563214

">XM_422814">

beta 1,3-galactosyltransferase, polypeptide 3

Tumorigenesis

      

Gga.6519.1.S1_s_at

-2.2

0.005

0.303

chr1: 21687403–21784133

XM_416014

suppression of tumorigenicity 7

Gga.15871.1.S1_at

-1.6

0.006

0.323

chr19: 8852117–8853712

CR387378

Tumor necrosis factor, alpha-induced protein 1

Gga.12058.1.S1_at

2.1

0.003

0.279

chr2: 135144222–135145306

XM_418407

similar to cylindromatosis (turban tumor syndrome); cylindromatosis 1, turban tumor syndrome

GgaAffx.22987.1.S1_at

-1.6

0.002

0.27

chr5: 26523325–26529591

XM_421205

thrombospondin 1

Gga.654.1.S2_at

1.8

0.001

0.27

chr6: 4237546–4314610

NM_205190

ret proto-oncogene

Signal Transduction

      

GgaAffx.3663.1.S1_at

-5.3

0.003

0.278

chr14: 8517712–8520620

XM_414857

similar to CASK interacting protein 1

Gga.12193.1.S1_a_at

9.0

0.007

0.324

chr2: 47562155–47581032

XM_418851

G-substrate

Gga.9510.1.S1_at

1.9

0.007

0.329

chr22:537865–569787

NM_001030886

protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform

Gga.1761.2.S1_at

13.8

0.002

0.27

chr3:107742849–107744353

XM_420066

similar to G-protein coupled receptor 116

GgaAffx.4775.1.S1_s_at

4.0

0.002

0.27

chr4:11707299–11760821

XM_420292

similar to receptor tyrosine kinase flk-1/VEGFR-2

Gga.807.1.S1_at

1.9

0.007

0.324

chr4:65686004–65686340

NM_001004368

kinase insert domain receptor (a type III receptor tyrosine kinase) (KDR)

Gga.12481.1.S1_s_at

1.9

0.007

0.327

chr7:27843665–27860405

NM_001012920

protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b

Gga.6653.1.S1_at

-1.7

0.004

0.281

chr11:17426083–17429654

NM_001030576

hepatic nuclear factor 4beta similar to suppressor of cytokine signaling 7; SH2

GgaAffx.8729.1.S1_s_at

-10.0

0

0.27

chrUn:137141542–137146475

XM_423895

domain containing SOCS box protein SOCS7; Nck, Ash and phospholipase C binding protein similar to prostaglandin E receptor 3; Rat kidney

GgaAffx.7207.1.S1_at

5.7

0.002

0.27

chr8:29278163–29285596

XM_426672

prostaglandin EP3 receptor (alternative splicing results in two different receptors EP3a and EP3b);

Gga.10737.1.S1_s_at

1.7

0.005

0.305

chr7:2212065–2223469

XM_421856

similar to Nck-associated protein 1 (NAP 1) (p125Nap1) (Membrane-associated protein HEM- 2)

GgaAffx.8719.1.S1_at

7.2

0.002

0.27

chr4:64869759–64912904

XM_420693

similar to regulator protein p122-RhoGAP – rat

Gga.12408.3.S1_a_at

2.7

0.005

0.305

chr5:41375030–41383659

NM_204357

ataxin 3

Gga.323.1.S1_at

3.6

0.001

0.27

chrUn:147862083–147882739

NM_204801

tetraspanin 18

Immunity

      

Gga.13806.1.S1_at

-4.8

0.004

0.293

chr7:7186627–7189336

NM_204240

adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)

Gga.18504.1.S1_at

6.9

0.003

0.278

chr5:5440836–5460278

CR390783

parvin, alpha

Gga.698.1.S1_at

1.6

0.004

0.293

chr6:14652488–14704778

NM_205441

vinculin

Gga.11155.1.S1_s_at

1.8

0.001

0.27

chr4:15341234–15354773

XM_420331

stromal antigen 2

Others

      

Gga.11258.1.S1_at

1.7

0.001

0.27

chr1:170378838–170513289

XM_417140

EF-hand domain family, member A1

Gga.15085.2.S1_s_at

6.6

0.001

0.27

chr1:172635432–172645292

XM_417167

CWF19-like 2, cell cycle control (S. pombe)

GgaAffx.5969.1.S1_at

6.2

0.002

0.27

chr1:24071401–24234367

XM_416024

similar to dedicator of cytokinesis 4

GgaAffx.12338.1.S1_s_at

3.9

0.001

0.27

chr15:7114454–7122253

NM_001030665

tuftelin interacting protein 11

GgaAffx.25724.1.S1_s_at

7.4

0.002

0.27

chr18:5638526–5691321

XM_415648

similar to Stxbp4 protein

GgaAffx.6849.1.S1_at

4.0

0.004

0.285

chr3:34026676–34050970

XM_419554

similar to endoplasmic reticulum oxidoreductin 1- Lbeta

GgaAffx.22370.3.S1_s_at

4.3

0

0.27

chr3:1260579–1276286

XM_420116

similar to chromosome 17 open reading frame 28; downregulated in multiple cancer 1

GgaAffx.6334.2.S1_at

3.9

0.004

0.293

chr4:33725503–33732138

XM_420444

SH3 domain protein D19

GgaAffx.22790.1.S1_s_at

6.1

0.003

0.279

chr6:26875122–27047419

XM_421771

similar to actin-binding LIM protein 1 medium isoform

GgaAffx.26704.1.S1_at

-5.2

0.001

0.27

chr8:14622890–14638649

XM_422345

similar to abhydrolase domain containing 7

Gga.16560.1.S1_at

3.3

0.003

0.279

chrE26C13:1961–7813

XM_422853

myeloid cell leukemia sequence 1 (BCL2-related)

Gga.16020.1.S1_at

2.2

0

0.27

chrUn:92422001–92432256

NM_001031613

similar to Death-associated protein kinase 1