Table 1 Distribution of tandem repeats (> 15 bp with 80% identity between copies) in four legume plastomes
Initial position | Final position | Size (≥ 15 bp) | Copies | Identity (≥ 80%) | Position related genes | |
|---|---|---|---|---|---|---|
Phaseolus | 66513 | 66572 | 15 | 4 | 80 | psa J/rpl 33 |
65733 | 65783 | 17 | 3 | 92.2 | trn W/trn P | |
80116 | 80179 | 16 | 4 | 98 | rps 8/rps 19, or rps 3/rps 19 | |
85700 | 85762 | 21 | 3 | 88.9 | ycf 2 | |
88119 | 88172 | 18 | 3 | 88.9 | ycf 2 | |
Lotus | 1694 | 1765 | 24 | 3 | 81.9 | psb A/trn K |
14487 | 14543 | 19 | 3 | 84.2 | trn L/trn T | |
17838 | 17888 | 17 | 3 | 86.3 | ycf 3, intron | |
24441 | 24492 | 26 | 2 | 100 | trn G/ycf 9 | |
47831 | 47878 | 16 | 3 | 96 | atp H/atp F | |
54191 | 54265 | 25 | 3 | 80 | psb K/trn Q | |
87031 | 87093 | 21 | 3 | 91 | ycf 2 | |
89444 | 89524 | 27 | 3 | 95 | ycf 2 | |
106513 | 106572 | 20 | 3 | 83.3 | trn N/ycf 1 | |
109580 | 109642 | 21 | 3 | 84.1 | ndh F/rpl 32 | |
Glycine | 28572 | 28640 | 23 | 3 | 81.2 | psb D/trn T |
51493 | 51555 | 21 | 3 | 84.1 | atp A/trn R | |
51753 | 51818 | 22 | 3 | 86.4 | trn R/trn G | |
58325 | 58396 | 24 | 3 | 80.6 | acc D/psa I | |
64627 | 64674 | 24 | 2 | 96 | pet G/trn W | |
66304 | 66345 | 21 | 2 | 100 | rpl 33/rps 18 | |
68386 | 58429 | 22 | 2 | 100 | clp P/rps 12_5'-end | |
81892 | 81954 | 21 | 3 | 85.7 | rpl 16,rps 3 | |
82665 | 82718 | 18 | 3 | 85.2 | rps 3,rps 19 | |
83848 | 83901 | 18 | 3 | 85.2 | rpl 2, intron | |
88334 | 88396 | 21 | 3 | 91 | ycf 2 | |
89622 | 89663 | 21 | 2 | 100 | ycf 2 | |
90774 | 90827 | 18 | 3 | 85.2 | ycf 2 | |
108203 | 108252 | 25 | 2 | 96 | trn N/ycf 1 | |
123651 | 123710 | 20 | 3 | 85 | trn L/rpl 32 | |
127141 | 127190 | 25 | 2 | 96 | ycf 1 | |
Medicago | 13248 | 13319 | 24 | 3 | 84.7 | rps 15/ycf 1 |
17087 | 17158 | 24 | 3 | 100 | ycf 1 | |
18922 | 19013 | 46 | 2 | 100 | ycf 1/trn N | |
18847 | 19031 | 37 | 5 | 84.3 | ycf 1/trn N | |
19100 | 19219 | 60 | 2 | 100 | ycf 1/trn N | |
27448 | 27617 | 85 | 2 | 93 | rrn 16/trn V | |
36490 | 36669 | 60 | 3 | 98 | ycf 2 | |
37267 | 37401 | 45 | 3 | 83.7 | ycf 2 | |
38869 | 38940 | 36 | 2 | 100 | ycf 2/trn I | |
38954 | 38997 | 22 | 2 | 100 | ycf 2/trn I | |
39247 | 39368 | 61 | 2 | 89 | trn I/rpl 23 | |
55590 | 55875 | 143 | 2 | 100 | clp P/rps 12_5'-end | |
55807 | 55920 | 57 | 2 | 88.6 | clp P/rps 12_5'-end | |
56146 | 56265 | 24 | 5 | 95 | clp P/rps 12_5'-end | |
56392 | 56466 | 25 | 3 | 100 | clp P/rps 12_5'-end | |
58382 | 58441 | 15 | 4 | 90 | rps 18 | |
58799 | 58867 | 23 | 3 | 81.2 | rps 18/rpl 33 | |
65523 | 65586 | 32 | 2 | 96.9 | cem A/psa I | |
67538 | 67702 | 33 | 5 | 91.5 | acc D | |
67639 | 67818 | 60 | 3 | 98 | acc D | |
68026 | 68214 | 63 | 3 | 100 | acc D | |
68251 | 68322 | 24 | 3 | 88.1 | acc D | |
68311 | 68436 | 63 | 2 | 93 | acc D | |
68577 | 68624 | 24 | 2 | 86.7 | acc D | |
68907 | 68954 | 24 | 2 | 96 | acc D | |
69341 | 69422 | 41 | 2 | 96 | acc D/trn Q | |
91311 | 91394 | 28 | 3 | 81 | trn C/pet N | |
99689 | 99742 | 18 | 3 | 92.6 | psb Z/trn G | |
105175 | 105222 | 24 | 2 | 98 | psa A |