Table 2 Functional classification of S. coelicolor M145 genes missing or divergent in S. lividans TK21
Functiona | Total Presentb | Number Missing/Divergent | Percent Missing/Divergent |
|---|---|---|---|
Cell processes | 800 | 32 | 4 % |
Macromolecule metabolism | 496 | 20 | 4 % |
Amino acids biosynthesis | 123 | 3 | 2 % |
Nucleotide biosynthesis | 30 | 0 | 0 % |
Ribosomal constituents | 67 | 0 | 0 % |
Biosynthesis of cofactors and carriers | 118 | 0 | 0 % |
Central intermediary metabolisms | 111 | 4 | 4 % |
Degradation of small molecules | 200 | 6 | 3 % |
Energy metabolism | 189 | 1 | 1 % |
Fatty acid and phosphatidic acid biosynthesis | 56 | 4 | 7 % |
Secondary metabolism | 277 | 3 | 1 % |
Periplasmic, exported or lipoproteins | 1318 | 84 | 6 % |
Two-component systems | 165 | 7 | 4 % |
RNA polymerase core enzyme binding | 88 | 3 | 3 % |
Regulatory proteins | 673 | 39 | 6 % |
Protein kinases | 39 | 1 | 3 % |
Laterally acquired elements | 139 | 95 | 68 % |
Not classified | 565 | 30 | 5 % |
Hypothetical proteins | 2371 | 293 | 12 % |
Total | 7825 | 625 | 8% |