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Table 3 Sequence homology matrix comparing carbonic anhydrase riboprobes and mRNA sequences

From: An analysis of expression patterns of genes encoding proteins with catalytic activities

 

Carbonic anhydrase cDNA

Template

Car1NM_009799#

Car2NM_009801

Car3NM_007606

Car5aNM_007608

Car5bNM_019513

Car10-I ENSMUST 00000092780*

Car10II ENSMUST 00000042943

Car13NM_024495

Car1

 

77/98 (78%)§

78/96 (81%)

    

80/102 (78%)

Car2

77/98 (78%)

 

130/168 (77%)

 

84/112 (75%)

  

133/185 (71%)

Car5b

 

84/112 (75%)

 

117/149 (78%) 207/284 (72%)

    

Car5a

    

117/149 (78%) 194/266 (72%)

   

Car7

   

69/85 (81%)

    

Car11

     

82/106 (77%)

82/106 (77%)

 

Car13

 

80/102 (78%)

      
  1. # GenBank accession number of reference sequence
  2. * Ensembl transcript ID
  3. §Homology of aligned fragments using bl2seq (template/cDNA) and percent homology
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BMC Genomics

ISSN: 1471-2164

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