Table 1 Enrichment of known ncRNAs in subsets of CRUFTS
From: Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes
Scheme/Overlap | ncRNA Enrichment | ncRNA Families |
|---|---|---|
All | 1.00 (1.00) | 135 miRNA, 21 rRNA, 58 snoRNA, 9 snRNA, 17 Mt-tRNA |
Filtered (Table 2 parameters) | 2.17 (6.630e-08) | miRNA, rRNA, snoRNA, snRNA, Mt-tRNA |
mRNA/EST | 0.64 (1.000) | miRNA, snRNA, snoRNA |
mRNA/EST (no UTR or exon) | 2.00 (7.000e-05) | miRNA, snRNA, snoRNA |
5' UTR | 0.97 (0.5806) | miRNA |
Intron | 0.97 (0.1148) | miRNA, rRNA, snoRNA, Mt-tRNA |
3' UTR | 0.00 (1.000) | - |
Intergenic | 1.21 (4.448e-03) | miRNA, rRNA, snRNA, snoRNA |
EvoFold | 4.67 (5.271e-06) | miRNA |
InDel selection | 1.74 (<2.2e-16) | miRNA, rRNA, snoRNA |
InDel selection (no miRNA) | 0.46 (0.4115) | rRNA, snoRNA |
Transposonfree (10 k) | 0.51 (0.9786) | miRNA |
Transposonfree (5 k) | 1.17 (0.09059) | miRNA, rRNA, snoRNA |
Covariance top 300 | 4.05 (4.277e-04) | miRNA, snoRNA, snRNA |
RNAz probability top 300 | 6.76 (8.367e-09) | miRNA |