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Table 5 List of genes showing alternative splicing

From: The functional modulation of epigenetic regulators by alternative splicing

Gene Symbol

Species

Function

Protein name

CDY-1

H.s.

A

chromodomain protein, Y-linked, 1

GCN5L2

H.s.

A

GCN5 general control of amino-acid synthesis 5-like 2 (yeast)

HAT1

H.s.

A

histone acetyltransferase 1

HTATIP (TIP60)

H.s.

A

HIV-1 Tat interacting protein

MORF4L1

H.s.

A

mortality factor 4 like 1

MYST1

H.s.

A

MYST histone acetyltransferase 1

NCOA-1

H.s.

A

Nuclear receptor coactivator 1

TAF1 (TAF250)

H.s.

A

TATA box binding protein (TBP)-associated factor, 250 kDa

CARM1 (PRMT4)

H.s.

M

coactivator-associated arginine methyltransferase 1

DOT1L

H.s.

M

DOT1-like, histone H3 methyltransferase (S. cerevisiae)

EHMT2 (G9a)

H.s.

M

euchromatic histone-lysine N-methyltransferase 2

EZH2

H.s.

M

enhancer of zeste homolog 2 (Drosophila)

MLL

H.s.

M

Myeloid/lymphoid or mixed-lineage leukemia

PRMT1

H.s.

M

protein arginine methyltransferase 1

SETD8 (PR-SET7, SET8)

H.s.

M

SET domain containing (lysine methyltransferase) 8

SETDB1

H.s.

M

SET domain, bifurcated 1

SUV39H1

H.s.

M

suppressor of variegation 3–9 homolog 1 (Drosophila)

SUV39H2

H.s.

M

suppressor of variegation 3–9 homolog 2 (Drosophila)

ATM

H.s.

P

ataxia telangiectasia mutated

ATR

H.s.

P

ataxia telangiectasia and Rad3 related

AURKB

H.s.

P

aurora kinase B

MAP3K12 (DLK/ZIP)

H.s.

P

Mitogen-activated protein kinase 12

PRKDC (DNA-PK)

H.s.

P

protein kinase, DNA-activated, catalytic polypeptide

RPS6KA5 (MSK1)

H.s.

P

ribosomal protein S6 kinase, 90kDa, polypeptide 5

RPS6KA4 (MSK2)

H.s.

P

ribosomal protein S6 kinase, 90kDa, polypeptide 4

CHD-3

H.s.

R

chromodomain helicase DNA binding protein 3

CHD-4

H.s.

R

chromodomain helicase DNA binding protein 4

SMARCA1 (SNF2L)

H.s.

R

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

SMARCA2 (BRM)

H.s.

R

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2

SMARCA4 (BRG1)

H.s.

R

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

UBE2A

H.s.

U

ubiquitin-conjugating enzyme E2A (RAD6 homolog)

CKII

H.s.

P

casein kinase 2, alpha 1 polypeptide

EHMT1

H.s.

M

Histone-lysine N-methyltransferase, H3 lysine-9 specific 5

GSG2 (HASPIN)

H.s.

P

Serine/threonine-protein kinase Haspin

FBXL11 (JHDM1A)

H.s.

DM

JmjC domain-containing histone demethylation protein 1A

FBXL10 (JHDM1B)

H.s.

DM

JmjC domain-containing histone demethylation protein 1B

JMJD1B (JHDM2B)

H.s.

DM

JmjC domain-containing histone demethylation protein 2B

JMJD2B (JHDM3B)

H.s.

DM

JmjC domain-containing histone demethylation protein 3B

JMJD2C (JHDM3C)

H.s.

DM

JmjC domain-containing histone demethylation protein 3C

AOF2 (LSD1)

H.s.

DM

Lysine-specific histone demethylase 1

MLL2

H.s.

M

Myeloid/lymphoid or mixed-lineage leukemia protein 2 (ALL1-related protein)

MLL3

H.s.

M

Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog

WBP7 (MLL4)

H.s.

M

WW domain-binding protein 7 (Myeloid/lymphoid or mixed-lineage leukemia protein 4) (Trithorax homolog 2)

MLL5

H.s.

M

myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)

NSD1

H.s.

M

H3-K36-HMTase and H4-K20-HMTase

PRMT5

H.s.

M

Protein arginine N-methyltransferase 5

PRDM2 (RIZ1)

H.s.

M

PRDM2 (PR domain containing 2, with ZNF domain)

RNF40

H.s.

U

E3 ubiquitin-protein ligase BRE1B (RING finger protein 40)

SETDB2

H.s.

M

Histone-lysine N-methyltransferase SETDB2

SIRT2

H.s.

DA

NAD-dependent deacetylase sirtuin-2

Gtf3c4

M.m.

A

General transcription factor IIIC, polypeptide 4

Htatip

M.m.

A

HIV-1 tat interactive protein, homolog (human)

Morf4l1

M.m.

A

mortality factor 4 like 1

Ncoa-1

M.m.

A

Nuclear receptor coactivator 1

Ehmt2

M.m.

M

euchromatic histone lysine N-methyltransferase 2

Ezh2

M.m.

M

enhancer of zeste homolog 2 (Drosophila)

Prmt1

M.m.

M

protein arginine N-methyltransferase 1

Carm1 (Prmt4)

M.m.

M

protein arginine N-methyltransferase 4

Setdb1

M.m.

M

SET domain, bifurcated 1

Suv39h1

M.m.

M

suppressor of variegation 3–9 homolog 1 (Drosophila)

Suv39h2

M.m.

M

suppressor of variegation 3–9 homolog 2 (Drosophila)

Stk4

M.m.

P

serine/threonine kinase 4

Myst2 (Hbo1)

M.m.

A

Histone acetyltransferase MYST2

Fbxl11 (Jhdm1a)

M.m.

DM

JmjC domain-containing histone demethylation protein 1A

Fbxl10 (Jhdm1b)

M.m.

DM

JmjC domain-containing histone demethylation protein 1B

Jmjd1a (Jhdm2a)

M.m.

DM

JmjC domain-containing histone demethylation protein 2A

Jmjd1b (Jhdm2b)

M.m.

DM

JmjC domain-containing histone demethylation protein 2B

Jmjd2a (Jhdm3a)

M.m.

DM

JmjC domain-containing histone demethylation protein 3A

Jmjd2b (Jhdm3b)

M.m.

DM

JmjC domain-containing histone demethylation protein 3B

Ring1A

M.m.

U

E3 ubiquitin-protein ligase RING1

Rnf20

M.m.

U

E3 ubiquitin-protein ligase BRE1A

Su(var)3–9

D.m.

M

Suppressor of variegation 3–9

trx

D.m.

M

trithorax

Taf1

D.m.

P

TBP-associated factor 1

brm

D.m.

R

Brahma

cbp-1

C.e.

A

Bromodomain

fbxl10 (jhdm1b)

X.l.

DM

JmjC domain-containing histone demethylation protein 1B

mez2

Z.m.

M

Polycomb protein EZ2

  1. In the "Species" column H.s., M.m., C.e., O.s., X.l. and Z.m. mean Homo sapiens, Mus musculus, Caenorhabditis elegans, Oryza sativa, Xenopus laevis and Zea mays, respectively. In the column "Function" A, DA, DM, M, P, U and R mean Acetylation, deacetylation, demethylation, methylation, phosphorylation, ubiquitination and chromatin remodelling, respectively.
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BMC Genomics

ISSN: 1471-2164

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