Table 1 Comparison of RScan and RSEARCH on the ncRNA family datasets
From: RScan: fast searching structural similarities for structured RNAs in large databases
Family | Query | Database | Methods | Hits/TP/FN2 | Time (h/m/s3) | ||
|---|---|---|---|---|---|---|---|
| Â | Rfam ID | Length (nt) | Size (nt)1 | # of True | Â | Â | Â |
tRNA RF00005 | AB042240.3/15036-15107 | 72 | 4,851 | 66 | RSEARCH | 66/66/0 | 6 m 3 s |
| Â | Â | Â | Â | Â | RScan | 49/49/17 | 5 s |
rRNA RF00001 | M28193.1/1-119 | 119 | 2,852 | 24 | RSEARCH | 24/24/0 | 26 m 28 s |
| Â | Â | Â | Â | Â | RScan | 20/20/4 | 6 s |
ribozyme RF00030 | AY090594.1/1-274 | 274 | 2,422 | 8 | RSEARCH | 8/8/0 | 6 h 47 m 47 s |
| Â | Â | Â | Â | Â | RScan | 6/6/2 | 10 s |
ribozyme RF00011 | U64878.1/1-308 | 308 | 2,626 | 7 | RSEARCH | 7/7/0 | 10 h 24 m 32 s |
| Â | Â | Â | Â | Â | RScan | 7/7/0 | 27 s |
ribozyme RF00010 | U28101.1/1-327 | 327 | 18,642 | 52 | RSEARCH | 48/44/8 | 12 h 17 m 58 s |
| Â | Â | Â | Â | Â | RScan | 30/30/22 | 3 m 9 s |
rRNA RF00177 | AF050603.1/1-475 | 475 | 17,382 | 34 | RSEARCH | 31/28/6 | 41 h 3 m 27 s |
| Â | Â | Â | Â | Â | RScan | 22/22/12 | 4 m 55 s |