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Table 1 Comparison of RScan and RSEARCH on the ncRNA family datasets

From: RScan: fast searching structural similarities for structured RNAs in large databases

Family Query Database Methods Hits/TP/FN2 Time (h/m/s3)
  Rfam ID Length (nt) Size (nt)1 # of True    
tRNA RF00005 AB042240.3/15036-15107 72 4,851 66 RSEARCH 66/66/0 6 m 3 s
      RScan 49/49/17 5 s
rRNA RF00001 M28193.1/1-119 119 2,852 24 RSEARCH 24/24/0 26 m 28 s
      RScan 20/20/4 6 s
ribozyme RF00030 AY090594.1/1-274 274 2,422 8 RSEARCH 8/8/0 6 h 47 m 47 s
      RScan 6/6/2 10 s
ribozyme RF00011 U64878.1/1-308 308 2,626 7 RSEARCH 7/7/0 10 h 24 m 32 s
      RScan 7/7/0 27 s
ribozyme RF00010 U28101.1/1-327 327 18,642 52 RSEARCH 48/44/8 12 h 17 m 58 s
      RScan 30/30/22 3 m 9 s
rRNA RF00177 AF050603.1/1-475 475 17,382 34 RSEARCH 31/28/6 41 h 3 m 27 s
      RScan 22/22/12 4 m 55 s
  1. 1The size of database is the total nucleotides of each database. nt: nucleotides.
  2. 2TP: true positive; FN: false negative.
  3. 3h/m/s: hour/minute/second.