Table 2 Primer sequences used for PCR-amplification of the SNP-regions.
No. | SNP Name | SNP ID | Forward Primer (5'-3') | Reverse Primer (5'-3') |
|---|---|---|---|---|
1 | IL-2_1 | rs2069772 | CCATTCTGAAACAGGAAACCA | CTTTAAGGGGGTGGGGATAC |
2 | IL-2_2 | rs2069763 | TGCAACTCCTGTCTTGCATT | ACTTACATTAATTCCATTCAAAATCA |
3 | IL-10_4 | rs1800894 | TCCAGCCACAGAAGCTTACA | GTGCTCACCATGACCCCTAC |
4 | IL-10_5 | rs1800871 | TCCAGCCACAGAAGCTTACA | GTGCTCACCATGACCCCTAC |
5 | IL-10_6 | rs1800872 | TCCAGCCACAGAAGCTTACA | GTGCTCACCATGACCCCTAC |
6 | TNFA_7 | rs11565 | ACCACAGCAATGGGTAGGAG | CATGCCCCTCAAAACCTAT |
7 | TNFA_8 | rs673 | ACCACAGCAATGGGTAGGAG | CGTCCCCTGTATTCCATACCT |
8 | TNFA_9 | rs1800629 | GCCCCTCCCAGTTCTAGTTC | GCATCAAGGATACCCCTCA |
9 | TNFA_10 | rs361525 | GCCCCTCCCAGTTCTAGTTC | GCATCAAGGATACCCCTCA |
10 | IL4_11 | rs2243246 | GCCCCTCCCAGTTCTAGTTC | GCATCAAGGATACCCCTCA |
11 | IL4_12 | rs2243250 | AGTGAGTGGTGGGGTCCTTA | AATGCCCACTTTTTGAATGG |
12 | IL4_13 | rs34185442 | ACCCAAACTAGGCCTCACCT | GGTGGCATCTTGGAAACTGT |
13 | IL4_14 | rs2970874 | GGAAGAGAGGTGCTGATTGG | CGATTTGCAGTGACAATGTG |
14 | IL6_16 | rs1800797 | GGAAGAGAGGTGCTGATTGG | CGATTTGCAGTGACAATGTG |
15 | IL6_16 | rs1800796 | TGGCAAAAAGGAGTCACACA | CCCAAGCCTGGGATTATGAAG |
16 | IL6_17 | rs1800795 | TGGCAAAAAGGAGTCACACA | CCCAAGCCTGGGATTATGAAG |
17 | IL4R_18 | rs1801275 | GCTAGCCTCAATGACGACCT | TCATGGGAAAATCCCACATT |
18 | IL4R_19 | rs1805011 | GAAACCTGGGAGCAGATCCTC | GGCCTTGTAACCAGCCTCTC |
19 | IL4R_20 | rs8832 | AAAGGGAGCTTCTGTGCATC | TCTCCGAGCTGGTCCAG |
20 | IL4R_21 | rs1805015 | TTCCTTAGGTTGATGCTGGAG | GGTTCCATGCATACGAGGAG |
21 | IL4R_22 | rs1805010 | ACCTGACTTGCACAGAGACG | AGGGCATGTGGGTTCTACT |
22 | IL12p40_23 | rs3124 | GCCTACAGGTGACCAGCCTA | AGCCCACGGTCCAGTGTAT |
23 | STAT6_24 | rs167769 | CACAACGGAATAGACCCAAAA | ATGGCAACTTGAGAGCTGGA |
24 | STAT6_25 | rs324015 | GCACTGACTGGAAGGGAAGT | CCCTAACCTGTGCTCTTACCC |
25 | STAT6_26 | rs703817 | GTCTCAGCCCTAGGGGAATG | CTCCACCTGGCTAACAGGAA |
26 | STAT6_27 | rs4559 | CAAAAGTACAAGGGCTGA | CCCAAATTTGTGTTGTCACG |
27 | IFNG_28 | rs2234685 | GGAAGTAGGTGAGGAAGAAGCG | TGGAGCAAAGAAGGTCATCA |
28 | IFNG_29 | rs1861493 | GGAAGTAGGTGAGGAAGAAGCG | TGGAGCAAAGAAGGTCATCA |
29 | IFNG_30 | rs2234687 | TCCCATGGGTTGTGTGTTTA | GGGTCACCTGACACATTCAA |
30 | IFNG_31 | rs2430561 | TTCAGACATTCACAATTGATTTTATTC | CCCCAATGGTACAGGTTTCT |
31 | IFNGR2_34 | rs1802585 | CCCAACTCAGCCCATCTTAG | ATCTCTTCCAGGGAGCCAGT |
32 | IFNGR2_35 | rs1059293 | GGGCTGAGCAGTCAGAA | CATTTTAAGCCAGCACACCA |
33 | IFNGR2_36 | rs9808753 | CAGAGCAGGTCCTGAGTTGGGAGC | GTTTCCCACGGGTTTGATAA |
34 | IRF1_37 | rs839 | GGACTGTTCCAAAGCCAGTG | CAGAAATGTGGCAAGATCCA |
35 | IRF1_38 | rs9282762 | TTGCAAACTAAGAAAGCACACAA | ATGGGTGACACCTGGAAGTT |
36 | IRF2_40 | rs1131553 | CTCCCAAAGTGCTGGGATTA | CTGTTGTAAGGCACCGGATT |
37 | IL8_41 | rs1175 | CTTCACCATCATGATAGCATCTGT | GGAGTATGACGAAAGTTTTCTTTG |
38 | IL8_42 | rs2227307 | TGCTTTGGTAACAAACATCCTTT | GGTAACCGTCCTTCTCAATAGG |
39 | IL13_43 | rs20541 | CTTCCGTGAGGACTGAATGAGAC | CTGCAAATAATGATGCTTTCGAAGTTTCAG |
40 | IL13_44 | rs1800925 | TGACATCAACACCCAACAGG | GCAGAATGAGTGCTGCTGTGGAG |
41 | IL18_47 | rs1946518 | GGTCAGTCTTTGCTATCATTCCAG | AGCCACACGGATACCATCAT |
42 | IL18_48 | rs1946519 | GGTCAGTCTTTGCTATCATTCCAG | AGCCACACGGATACCATCAT |
43 | IL1B_49 | rs16944 | AGCCTGAACCCTGCATACC | CAATAGCCCATCCCTGTCTGT |
44 | IL1B_50 | rs1143627 | TCTCAGCCTCCTACTTCTGCTT | CAGAGAGACTCCCTTAGCACCT |
45 | IL1B_51 | rs1799916 | TCTCAGCCTCCTACTTCTGCTT | CAGAGAGACTCCCTTAGCACCT |
46 | IL1A_52 | rs17561 | CCCCCTCCAGAACTATTTTCC | ACTTTGATTGAGGGCGTCAT |
47 | IL1A_53 | rs1800587 | TAGGCTGGCCACAGGAATTA | AGCCAGAACCAGTGGCTAAG |
48 | IL9_56 | rs1799962 | CCTTCGTTAGAACACCCATGA | AGACAGGGATTCTGGTGTGA |
49 | TNFR1_60 | rs1800692 | TCCCCCTCCTGTATTCTGTG | GTGCACACGGTGTTCTGTTT |
50 | TNFR1_61 | rs1800693 | CCTGGAGTGCACGAAGTTGT | ATAGATGGATGGGTGGGATG |
51 | TNFRSF6_62 | rs2234768 | CATCCTCCTTATCCCACTTCTTT | CACCCTGTGTTTTGCATCTA |
52 | LTA_65 | rs1800683 | CACTGCCGCTTCCTCTATAA | GGTAGTCCAAAGCACGAAGC |
53 | LTA_66 | rs1041981 | CCCCCTCAACTCTGTTCTCC | GGGAGGTCAGGTGGATGTTT |
54 | LTA_67 | rs909253 | GGGTTTGGTTTTGGTTTCCT | CAGAGAAACCCCAAGGTGAG |
55 | IL1RN_68 | rs2234676 | GCCCATCTCCTCATGCTG | GCTGCTGCCCATAAAGTAG |
56 | IL1RN_69 | rs419598 | TCCTTTTCAGAATCTGGGATGT | CGTGATGCCCAGATACATTG |
57 | CTLA4_70 | rs2384137 | AACACCGCTCCCATAAAGC | CCTCCTCCATCTTCATGCTC |
58 | NFKBIA_72 | rs1800439 | CCTTGTTTTCAGCTGCCCTA | TCGTCCCCTACAAAAAGTTCA |
59 | IL8RB_77 | rs2230054 | ACATTCCAAGCCTCATGTCC | TACCAGGGCAGGCTTTCTA |
60 | ICAM1_78 | rs1799969 | CTTGAGGGCACCTACCTCTG | AGGATACAACAGGCGGTGAG |
61 | ICAM1_79 | rs5498 | CTTGAGGGCACCTACCTCTG | AGGATACAACAGGCGGTGAG |
62 | IL3_81 | rs40401 | GAGCAGTTAACCCAGCTTGTC | CACCTTGCTGCTGCACATA |
63 | IL3_82 | rs31480 | GAGCAGTTAACCCAGCTTGTC | CACCTTGCTGCTGCACATA |
64 | MCP1_87 | rs4611511 | AAAGCTGCCTCCTCAGAGTG | CACAGGGAAGGTGAAGGGTA |
65 | MCP1_88 | rs34020694 | AGAGAAAACCCGAAGCATGA | TCTTCCTAGGCCATCTCACC |
66 | RANTES_89 | rs2107538 | ATCCAGAGGACCCTCCTCAA | GGAGTGGCAGTTAGGACAGG |
67 | RANTES_90 | rs2280788 | TTCTTTTCCGTTTTGTGCAAT | CGTGCTGTCTTGATCCTCTG |
68 | CCR5_91 | rs1799863 | CTGCCTCCGCTCTACTCACT | GCCAGGTTGAGCAGGTAG |
69 | CCR2_94 | rs1799865 | AGAGGCATAGGGCAGTGAGA | GGTCCAGTTGACTGGGTGCTT |
70 | C5_95 | rs17611 | TGCAGTTTGCCCTACCTGAT | TGCTACCATTTAAGTCCTGGGTA |
71 | C5_96 | rs17612 | TTTTAGCTACAAGCCCAGCA | AATGAAGCATTCACAACACGA |
72 | P2X7_97 | rs3751143 | TTCCTGGACAACCAGAGGAG | ACCAGCTTCCTGAACAGCTC |
73 | IL7R_106 | rs1494555 | CACTATAGTTAAACCTGAGGCTCC | TCCTGGCGGTAAGCTACATC |
74 | PRF1_107 | rs885822 | CCCAGGTCAACATAGGCATCC | CGAACAGCAGGTCGTTAAT |
75 | TLR2_108 | rs1804965 | ATTCTTCTGGAGCCCATTGA | GGACTTTATCGCAGCTCTCA |
76 | TCL1B_109 | rs1064017 | ACAGTGCACTTGTGGCAG | CTGGCCATGGTCTGCTATTT |
77 | CCR5_110 | rs1800452 | TAGTCATCTTGGGGCTGGTC | TGTAGGGAGCCCAGAAGAGA |
78 | IL11_111 | rs1126757 | GGGACCACAACCTGGATTC | ATCAGAGAACACCCGACCAG |
79 | IL11_112 | rs2298885 | GGCTGTGTTCACCATAGCAA | ATCCCAAGCAAGCCTCTCTC |
80 | IL8RA_117 | rs2234671 | CATCTTTGCTGTCGTCCTCA | CCAGAATCTCAGTGGCATCC |
81 | IL1L1_118 | rs1800930 | GATGGTGCTACTGCTGTGGA | GGGCTCAGGGTAACACTG |
82 | CD36_119 | rs1334512 | CTGGCAACAAACCACACACT | TCCTACACTGCAGTCC |
83 | VDR_121 | rs1544410 | CCTCACTGCCCTTAGCTCTG | CAGGAATGTTGAGCCCAGTT |
84 | VDR_122 | rs7975232 | CTGCCGTTGAGTGTCTGTGT | ACGTCTGCAGTGTGTTGGAC |
85 | IL5RA_123 | rs2290610 | CCATGGCAATGTTTTGTCCT | CAGGTGCAGTGAAGGGAAAC |
86 | IL5R_124 | rs2069812 | CTTGCTTTTTCCTGCTGCTC | AGTCCAGGAATGGAGGCTCT |
87 | IL5R_125 | rs2069818 | TGTGGAGAAGAAAGACGGAGA | CAAAATCTTTGGCTGCAACAAACCA |
88 | CX3CR1_126 | rs3732379 | GGTGGTCATCGTGTTTTTCC | AGGCAACAATGGCTAATGC |
89 | CX3CR1_127 | rs3732378 | GGTGGTCATCGTGTTTTTCC | AGGCAACAATGGCTAATGC |
90 | TNFRSF1B_128 | rs1061622 | CTCCTGACCAAGCCTCCTC | GTCACTGGCTGGGGTAAGTG |
91 | TNFRSF1B_129 | rs1061624 | TCCTCTAGTGCCCTCCACAG | CACAGAGAGTCAGGGACTTGC |
92 | TNFRSF1B_130 | rs3397 | TCCTCTAGTGCCCTCCACAG | CACAGAGAGTCAGGGACTTGC |
93 | TNFRSF1A_131 | rs887477 | CAGCACAACTGGTCAGAACC | CCTCCTCCCAGTTCAACAAG |
94 | TNFRSF1A_132 | rs4149570 | TACAGGAACCCCAGGAGACA | TGGGTTCCAATTCAGAATGCTT |
95 | IL4R_135 | rs1805016 | GTGTCATGGCCAGGAGGAT | AGACTGGCCTCCAGTGGAAC |
96 | IL6_137 | rs20069860 | TCCCTCCACTGCAAAGGATT | CTGCAGCCACTGGTTCTGT |
97 | IL9_138 | rs20069885 | ACTTTCATCC CCACAGT | TTGCCTCTCATCCCTCTCAT |
98 | NKFB_139 | rs1020759 | TGCTTCCCTCTTGTGTTTCA | GGGGATGACCTTTAAGTGGA |
99 | GATA3_141 | rs57013 | TCCATCCATTGCACTGAGTC | CCAGAGCAGCTGGTTTAAGTG |