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Table 1 Number of probes on each platform with AceView and RefSeq genome and transcript alignments

From: A detailed transcript-level probe annotation reveals alternative splicing based microarray platform differences

 

Unique Probes

Genome Alignments

AceView Alignments

RefSeq Alignments

Agilent

13335

12676 (95%)

9698 (73%)

6901 (52%)

Codelink

9969

9855 (99%)

9330 (94%)

8243 (83%)

Affymetrix

199015

193006 (97%)

179740 (90%)

153611 (77%)

  1. "Unique probes" is the number of probes on each platform that had sequences to be aligned. The other alignment categories indicate the number of probes that had a specific alignment.
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BMC Genomics

ISSN: 1471-2164

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