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Table 1 List of distinctive 70 genes between types A and B 3

From: Genome-wide genetic aberrations of thymoma using cDNA microarray based comparative genomic hybridization

ID Symbol Cytoband Name type A type B3
     gain loss gain loss
AA186327 SNX14 6q14-q15 sorting nexin 14     (5/8)
AA458945 RAB30 11q12-q14 RAB30, member RAS oncogene family (5/6)    (4/8)
AI201652 EST    (4/6)   (1/8) (3/8)
AI337344 HSRG1 16q23.1 HSV-1 stimulation-related gene 1 (6/6)   (3/8) (1/8)
AA991868 EST    (6/6)   (3/8) (2/8)
AA465687 HCC-4 2q24.2 cervical cancer oncogene 4 (6/6)   (2/8) (4/8)
AI493835 ESTs    (6/6)   (2/8) (1/8)
AW087220 ESTs    (4/6)    
AA478436 SMARCD2 17q23-q24 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 (6/6)    (2/8)
AI015542 TG737 13q12.1 Probe hTg737 (5/6)   (2/8)  
AI733279 ESTs    (6/6)   (2/8) (4/8)
AA973681 ESTs    (3/6)    
N93021 TBCA 5q14.1      (5/8)
AA917489 ESTs    (6/6)    
AA775364 RPL30 8q22 ribosomal protein L30 (1/6)    
AA987488 ESTs    (2/6)    (2/8)
AA478585 BTN3A3 6p22.1 butyrophilin, subfamily 3, member A3 (1/6)    (2/8)
AI291184 OCLN 5q13.1 occludin (5/6)    (2/8)
AI348521 HBS1L 6q23-q24 HBS1-like     (6/8)
AA287917 TNPO1 5q13.2 karyopherin (importin) beta 2 (2/6)    (2/8)
AA885609 MAP1A 15q13-qter microtubule-associated protein 1A     (8/8)
AI375415 ESTs       (2/8)
AA489670 ESTs       (3/8)
AI972677 MSMB 10q11.2 microseminoprotein, beta- (1/6)    (1/6)
N71628 SPIB 19q13.3-q13.4 Spi-B transcription factor (Spi-1/PU.1 related) (3/5)    (1/6)
AI383789 ESTs       
AI261862 ESTs    (2/6)    (3/8)
AI985214 TFPI 2q31-q32.1 tissue factor pathway (2/6)    
H17513 HSPA1L 6p21.3 heat shock 70kDa protein 1-like     (2/8)
T61428 NEDD9 6p25-p24 neural precursor cell expressed, developmentally down-regulated 9 (2/6)    (2/8)
N90109 NCL 2q12-qter nucleolin (3/6)    (1/8)
AI972568 RPL36A Xq22.1 ribosomal protein L36a (3/6)    
AA442092 CTNNB1 3p21 catenin, beta 1, 88 kDa     (1/8)
AA902196 ESTs    (2/6)    (1/8)
AW009090 NDUFB3 2q31.3 NADH dehydrogenase 1 beta subcomplex, 3, 12 kDa     (1/8)
AA975250 MAT2B 5q34-q35.1 methionine adenosyltransferase II, beta     (3/8)
AI281237 C13orf12 13q12.3 chromosome 13 open reading frame 12     (3/8)
H51066 OBRGRP 1p31.3 leptin receptor gene-related protein     (2/8)
AA465386 DDX21   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21     (3/8)
AI951501 RPL12 9q34 ribosomal protein L12 (6/6)   (1/8)  
AW075424 SFRS3 6p21 splicing factor, arginine/serine-rich 3 (6/6)    (1/8)
AI086414 EST       (2/8)
AI279626 EST       (2/8)
AA677257 TPMT 6p22.3 thiopurine S-methyltransferase     (6/8)
AA887201 C13orf1 13q14 chromosome 13 open reading frame 1     (1/8)
AI284218 ESTs    (2/6)    (1/8)
AA991871 FOXA1 14q12-q13 forkhead box A1 (3/6)    
AA864434 ESTs    (4/6)   (1/8) (1/8)
AI318162 FLJ14936 1p33-p32.1 hypothetical protein FLJ14936     (1/8)
AA504351 ZNF146   zinc finger protein 146   (1/6)   (6/8)
AI302566 ESTs    (3/6)    (1/8)
AI311303 ESTs       (3/8)
AW078798 UBB 17p12-p11.2 ubiquitin B (6/6)   (2/6)  
AA927666 ARCH 1p35.1 archease (3/6)    (1/8)
AA426027 SNX3 6q21 sorting nexin 3 (3/6)    (6/8)
AI262055 ESTs       (1/8)
AA936514 C6orf10 6p21.3 chromosome 6 open reading frame 10   (1/6)   (6/8)
AI364310 ESTs       (5/6)
AA504141 UBE2J1 6q15 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)     (1/8)
AA130187 WT1 11p13 Wilms tumor 1 (1/6)    
N56693 COX7B Xq21.1 cytochrome c oxidase subunit VIIb (5/6)   (1/8)  
AA401441 BF 6p21.3 B-factor, properdin     (1/8)
AA917821 MRPS30 5q11 mitochondrial ribosomal protein S30 (1/6)    
AI431827 ESTs       (4/8)
AA935697 ESTs       (3/8)
AI248605 BTN3A2 6p22.1 butyrophilin, subfamily 3, member A2     (7/8)
AI206970 ESTs       
AW058415 HBXIP 1p13.3 hepatitis B virus × interacting protein (2/6)    
N69107 YWHAH 22q12.3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide     (1/6)
AA863025 ESTs    (2/6)    
  1. The ID indicate GeneBank ID and the symbol and the cytoband information are from their SOURCE http://source.stanford.edu. The incidence is the number oh cases having log2 ratio in the range of our criteria ± 0.3. ESTs are expressed sequenced tags, clones of unknown functions. Genes are listed according to order FDR values.