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Table 3 Distribution of interspersed repeat DNA sequences within both BAC end sequences (BESs) in different repeat classes

From: End-sequencing and characterization of silkworm (Bombyx mori) bacterial artificial chromosome libraries

 

Eco RI BESs

Bam HI BESs

 

GC%

Elements

Percentage

GC%

Elements

Percentage

SINE

45.57

4088

1.63

45.92

2120

1.37

LINE

53.85

6865

5.14

53.22

11105

16.40

LTR

47.04

4140

2.32

47.26

2264

2.22

DNA

41.49

3711

3.77

40.77

744

0.70

Unclassified

40.91

1469

0.69

41.24

963

0.62

  1. "Elements" denotes the number of repeat elements detected. "Percentage" denotes the ratio of length occupied by interspersed repeats to total length. GC content of unmasked region of Eco RI and Bam HI BESs were 35.49% and 37.05%, respectively. Overall GC content of Eco RI and Bam HI BESs were 37.45% and 40.30%, respectively.
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BMC Genomics

ISSN: 1471-2164

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