Figure 6

For the contig Ss1.1-rese12c_n15.5 we predicted three non-overlapping conserved secondary RNA structures. Inside one novel RNA structure prediction, we found a conserved microRNA structure by RNAmicro at the conread positions 87 to 220 in the positive reading direction with p = 1, which is illustrated in Figure 6. The alignment to cow, human chromosome 11 (3'UTR of hypothetical protein NM_001007139 (GenBank)) and mouse has an average sequence identity of 71.5%. The structure was calculated by RNAalifold and colored by colorrna.pl, being both from the Vienna RNA Package [75].