Table 3 Enriched cluster categories in region B: "Pezizomycotina specific"
From: Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina
Software or database | Database identifier | Category | Count of clusters in region | % of clusters in region | % of all clusters with category | P-value | Author assignment | Figure 9 |
|---|---|---|---|---|---|---|---|---|
ProtFun | - | TMHMM: No transmembrane | 913 | 81.0 | 21 | 5.60E-03 | - | - |
ProtFun | - | Enzyme/nonenzyme: Nonenzyme | 175 | 16.0 | 25 | 1.30E-03 | - | - |
ProtFun | - | TargetP: Secretion | 128 | 11.0 | 28 | 1.90E-05 | - | - |
ProtFun | - | Cellular role: Cell envelope | 93 | 8.0 | 35 | 9.50E-09 | - | - |
ProtFun | - | Cellular role: Central intermediary metabolism | 84 | 7.0 | 26 | 1.20E-02 | - | - |
Interpro | IPR001138 | Fungal transcriptional regulatory protein, N-terminal | 41 | 3.6 | 51 | 7.10E-10 | Transcription regulation | YES |
ProtFun | - | Cellular role: Regulatory functions | 37 | 3.0 | 39 | 1.80E-05 | - | - |
Interpro | IPR007219 | Fungal specific transcription factor | 25 | 2.2 | 37 | 1.30E-03 | Transcription regulation | YES |
ProtFun | - | Cellular role: Purines and pyrimidines | 27 | 2.0 | 28 | 4.30E-02 | - | - |
Interpro | IPR001810 | Cyclin-like F-box | 13 | 1.2 | 62 | 4.00E-05 | Macromolecule interaction | YES |
Interpro | IPR000637 | HMG-I and HMG-Y, DNA-binding | 7 | 0.6 | 88 | 9.70E-05 | Chromatin | NO |
Interpro | IPR001087 | Lipolytic enzyme, G-D-S-L | 6 | 0.5 | 75 | 1.40E-03 | Metabolism | NO |
Interpro | IPR006710 | Glycoside hydrolase, family 43 | 6 | 0.5 | 75 | 1.40E-03 | Plant biomass degradation | NO |
Interpro | IPR005302 | MOCO sulphurase C-terminal | 3 | 0.3 | 100 | 8.50E-03 | Metabolism | NO |
Interpro | IPR006209 | EGF-like | 3 | 0.3 | 100 | 8.50E-03 | Extracellular | NO |
Funcat | 36.20.35 | Response to environmental stimuli | 3 | 0.0 | 75 | 4.20E-02 | Signalling | - |