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Table 4 Comparison of array based clonotyping to cloning and sequencing of PCR products: Subject C

From: Quantitative measurement of pathogen specific human memory T cell repertoire diversity using a CDR3β-specific microarray

  Array analysis Cloning/sequencing
Clonotype 1 2 3 Mean (SD) 1 2 3 Mean (SD)
50 9 23 16 16.1 (+/-7.1) 4 1 0 1.5 (+/-1.8)
70 26 12 0 12.6 (+/-12.9) 61 2 0 20.9 (+/-34.5)
51 19 1 4 8.1 (+/-9.5) 21 0 9 10.0 (+/-10.8)
2 11 11 0 7.3 (+/-6.3) 10 33 57 33.1 (+/-23.5)
8 0 21 0 7.0 (+/-12.1) 0 56 0 18.7 (+/-32.4)
60 5 0 11 5.3 (+/-5.5) 0 0 0 0 (+/-0)
20 0 0 14 4.8 (+/-8.2) 0 0 0 0 (+/-0)
6 3 2 5 3.5 (+/-1.8) 0 2 22 7.9 (+/-12.0)
58 0 2 8 3.2 (+/-4.0) 0 0 0 0 (+/-0)
47 3 0 5 2.8 (+/-2.8) 0 0 0 0 (+/-0)
88 0 0 8 2.6 (+/-4.4) 0 0 0 0 (+/-0)
106 0 1 7 2.5 (+/-3.6) 0 0 0 0 (+/-0)
18 0 7 0 2.3 (+/-4.0) 0 0 0 0 (+/-0)
71 2 1 3 2.1 (+/-1.2) 0 0 0 0 (+/-0)
82 0 0 5 1.8 (+/-3.2) 0 0 0 0 (+/-0)
61 0 1 4 1.8 (+/-2.3) 0 0 0 0 (+/-0)
86 0 5 0 1.7 (+/-2.9) 0 0 0 0 (+/-0)
7 2 3 0 1.7 (+/-1.5) 0 0 0 0 (+/-0)
94 0 0 4 1.5 (+/-2.5) 0 0 0 0 (+/-0)
21 0 4 0 1.3 (+/-2.3) 0 0 0 0 (+/-0)
49 4 0 0 1.3 (+/-2.3) 0 0 0 0 (+/-0)
26 4 0 0 1.3 (+/-2.3) 0 0 0 0 (+/-0)
42 4 0 0 1.3 (+/-2.3) 0 0 0 0 (+/-0)
67 4 0 0 1.3 (+/-2.3) 0 0 0 0 (+/-0)
74 0 0 3 1.1 (+/-1.9) 0 0 0 0 (+/-0)
52 0 3 0 1.0 (+/-1.7) 0 1 0 0.3 (+/-0.5)
84 0 3 0 1.0 (+/-1.7) 0 0 0 0 (+/-0)
75 3 0 0 1.0 (+/-1.7) 0 0 0 0 (+/-0)
55 2 0 0 0.7 (+/-1.1) 0 0 0 0 (+/-0)
1 0 0 0 0 (+/-0) 4 4 10 5.7 (+/-3.5)
23 0 0 0 0 (+/-0) 0 0 2 0.7 (+/-1.3)
69 0 0 0 0 (+/-0) 1 0 0 0.4 (+/-0.7)
90 0 0 0 0 (+/-0) 0 0 1 0.4 (+/-0.6)
4 0 0 0 0 (+/-0) 0 1 0 0.3 (+/-0.5)