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Table 1 General BAC information

From: Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing

         Ratioe of    
BAC Linkage group Genbank accession SNP IDb Length (bp) Phase Gap ORFsc Averaged EST coverage EST- based coverage Overall gene homeologyf Gene densityg
gmw2-133d1 F AC158503 8001 117591 III 0 13 32.6 38.2 3 of 13 1/9.05
gmw1-93l19 M AC166092   51037 III 0 5 62.4 50.5 3 of 5 1/10.2
gmw1-105h23 O AC187294 30491 134287 III 0 18 82.0 76.4 18 of 18 1/7.46
gmw1-15k6 I AC160454 26051 148858 III 0 22 77.0 71.1 18 of 22 1/6.77
gmw1-11j16 L AC166091   69947 III 0 9 82.2 83.0 2 of 9 1/7.77
gmw1-45m6 a AC166742   143028 III 0 7 53.6 53.0 1 of 7 1/20.4
gmw1-5g16 O AC169184   115953 II 2 11 74.0 68.8 4 of 11 1/9.66
gmw1-103e11 I AC166090   89397 III 0 12 78.6 81.3 4 of 12 1/7.45
gmw1-58k3 O AC185959   177331 II 2 8 50.7 47.5 3 of 8 1/22.2
gmw1-57d24 D1a AC170860 20113 162359 II 2 19 75.0 71.5 3 of 19 1/9.02
gmw1-27d20 D1b AC173959 16079 227022 I 6 24 65.4 61.9 3 of 24 1/9.46
gmw1-74i13 C1 DQ336954 5981 173654 III 0 18 68.3 70.4 13 of 18 1/9.65
gmw1-52d3 C2 DQ336955   98675 III 0 10 59.2 62.1 9 of 10 1/9.87
gmw1-13o17 D1a AC196857   89030 II 5 9 41.5 48.0 1 of 9 1/11.1
gmw1-8g7 a AC196858   53292 III 0 4 32.6 30.7 1 of 4 1/13.3
UMb001-24d13 E DQ347960 13567 111223 II 1 8 84.0 79.3 3 of 8 1/13.9
UMb001-5f5 A2 DQ347961 42937 65475 II 2 5 91.9 94.6 3 of 5 1/10.9
Average     119303    14 59.1 59.05   1/11.1
  1. a Unmappable; no polymorphic SSRs identified or any matches of CDS to SNP data
  2. b SNP Ids are taken directly from Choi et al. (2007). EST sequence from which SNP derived found in Methods and Materials.
  3. c Does not include ORFs that are alternatively spliced
  4. d An average across the BAC of the number of bp supported by an EST or cDNA divided by the total number of bp for each annotation
  5. e A ratio of the total number of bp on the BAC that are annotated divided by the total number of bases that have EST or cDNA support
  6. f Count is based upon the number of homeologs shared between BACs out of the total number of genes
  7. g Gene density is in 1 gene per × number of kilobases