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Table 7 Sequence and positions of primers used to amplify and/or sequence the mtDNA genomes of chimpanzee and gorilla

From: Interspecies hybridization on DNA resequencing microarrays: efficiency of sequence recovery and accuracy of SNP detection in human, ape, and codfish mitochondrial DNA genomes sequenced on a human-specific MitoChip

Primer

Sequence (5'-> 3')

PCR

5' Pos

h01

F: CTCCTCAAAGCAATACACTG

R: TGCTAAATCCACCTTCGACC

x

1

839

h02

F: CGATCAACCTCACCACCTCT

R: TGGACAACCAGCTATCACCA

 

635

1 435

h03

F: GACTAACCCCTATACCTTCTGC

R: GGCAGGTCAATTTCACTGGT

 

1 240

2 097

h04

F: AAATCTTACCCCGCCTGTTT

R: AGGAATGCCATTGCGATTAG

 

1 889

2 773

h05

F: TACTTCACAAAGCGCCTTCC

R: ATGAAGAATAGGGCGAGGG

 

2 558

3 388

h06

F: TGGCTCCTTTAACCTCTCCA

R: AAGGATTATGGATGCGGTTG

x

x

3 185

4 087

h07

F: ACTAATTAATCCCCTGGCCC

R: CCTGGGGTGGGTTTTGTATG

 

3 874

4 851

h08

F: CTAACCGGCTTTTTGCCC

R: ACCTAGAAGGTTGCCTGGCT

 

4 646

5 458

h09

F: GAGGCCTAACCCCTGTCTTT

R: ATTCCGAAGCCTGGTAGGAT

x

x

5 243

6 069

h10

F: CTCTTCGTCTGATCCGTCCT

R: AGCGAAGGCTTCTCAAATCA

x

x

5 858

6 742

h11

F: ACGCCAAAATCCATTTCACT

R: CGGGAATTGCATCTGTTTTT

 

6 537

7 522

h12

F: ACGAGTACACCGACTACGGC

R: TGGGTGGTTGGTGTAAATGA

 

7 316

8 224

h13

F: TTTCCCCCTCTATTGATCCC

R: GTGGCCTTGGTATGTCCTTT

x

x

8 010

8 824

h14

F: CCCACCAATCACATGCCTAT

R: TGTAGCCGTTGAGTTGTGGT

x

8 619

9 557

h15

F: TCTCCATCTATTGATGAGGGTCT

R: AATTAGGCTGTGGGTGGTTG

 

9 375

10 266

h16

F: GCCATACTAGTCTTTGCCGC

R: TTGAGAATGAGTGTGAGGCG

 

11 061

10 919

h17

F: TCACTCTCACTGCCCAAGAA

R: GGAGAATGGGGGATAGGTGT

x

10 703

11 503

h18

F: TATCACTCTCCTACTTACAG

R: AGAAGGTTATAATTCCTACG

x

11 337

12 201

h19

F: AAACAACCCAGCTCTCCCTAA

R: TCGATGATGTGGTCTTTGGA

x

x

11 959

12 934

h20

F: ACATCTGTACCCACGCCTTC

R: AAGGGGTCAGGGTTCATTC

x

12 727

13 694

h21

F: GCATAATTAAACTTTACTTC

R: AGAATATTGAGGCGCCATTG

 

13 489

14 425

h22

F: TGAAACTTCGGCTCACTCCT

R: AGCTTTGGGTGCTAATGGTG

x

14 245

15 405

h23

F: TCATTGGACAAGTAGCATCC

R: GAGTGGTTAATAGGGTGATAG

x

x

15 200

16 009

Gg11

F: CCCACACAGTTTATGTAGCTTACCTC

x

6612

Gg12

R: GAATATTAGCTTTGGGTGCTGATGGTGG

x

8093

Gg18

F: CTATCCCTCAACCCCGATATTACT

R: CTTAACCAACTACAACCCCAGACTC

x

x

11 520

12 109

Gg20

F: CCTTACTTCAACCTCCCTAGCCATTG

R: CGTTAACTACTCCTTCCGCCAACTCC

 

12 859

14 353

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BMC Genomics

ISSN: 1471-2164

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