Table 3 A) Clusters that contain sequences from all three libraries and B) the most abundantly sequenced transcripts for each of the three F. candida cDNA libraries. n = the number of sequences that are found in a cluster and that originate from the library specified. e-values for blast analyses against 'nr'-databases
From: Collembase: a repository for springtail genomics and soil quality assessment
Library | Cluster (n) | Overview of related sequences (blastx) | Species | GenBank Accession | blastx e-value |
|---|---|---|---|---|---|
A. | |||||
All three | Fcc00101 (5) | Hypothetical protein | Caenorhabditis elegans | CAA90252 | 1e-32 |
BCS1-like | Mus musculus | AAH19781 | 3e-29 | ||
Fcc02080 (3) | No Significant Hit | - | - | ||
Fcc00256 (6) | No Significant Hit | - | - | ||
Fcc00343 (22) | Hypothetical protein | Aspergillus nidulans | XP_001397474 | 1e-19 | |
Haloacid dehalogenase-like hydrolase | Neosartorya fischeri | XP_001260321 | 2e-19 | ||
Hypothetical protein | Danio rerio | NP_001017717 | 8e-06 | ||
Fcc01457 (8) | Cytochrome c oxidase s.u.II | Folsomia candida | AAS66294 | 7e-93 | |
Fcc03109 (3) | No Significant Hit | - | - | ||
Fcc00170 (27) | Alpha-aminoadipyl-cysteinyl -valine synthetase | Lysobacter lactamgenus | BAA08846 | 4e-58 | |
B. | |||||
Normalized | Fcc00179 (31) | No Significant Hit | - | - | |
Fcc00087 (25) | No Significant Hit | - | - | ||
Fcc00164 (16) | No Significant Hit | - | - | ||
Fcc00632 (14) | No Significant Hit | - | - | ||
Fcc00225 (12) | GA19585-PA | Drosophila pseudoobscura | EAL32218 | 2e-06 | |
Phenanthrene | Fcc00058 (98) | Dipeptidyl peptidase | Nasonia vitripennis | XP_001607433 | 9e-35 |
Cytochrome P450 | Aedes albopictus | AAF97937 | 1e-12 | ||
Fcc00015 (91) | Cytochrome P450 | Anopheles minimus | AAN05727 | 9e-15 | |
Fcc00021 (35) | Monooxygenase, DBH-like 1 | Rattus norvegicus | AAH91331 | 1e-21 | |
Fcc00217 (25) | Monooxygenase, DBH-like 1 | Gallus gallus | NP_989955 | 2e-08 | |
Fcc04217 (23) | Cytochrome P450 | Apis melifera | XP_392000 | 3e-12 | |
Cadmium | Fcc01017 (16) | Hypothetical protein | Ustilago maydis | XP_757859 | 5e-13 |
Endo-1,3 1,4-beta-D -glucanase precursor | Oryza sativa | XP_480878 | 2-07 | ||
Fcc00170 (15) | Alpha-aminoadipyl-cysteinyl -valine synthetase | Lysobacter lactamgenus | BAA08846 | 4e-58 | |
Fcc01428 (16) | 16S ribosomal RNA gene | Folsomia candida | AY555551 | 1e-66* | |
Fcc01142(12) | No Significant Hit | - | - | ||
Fcc00018 (9) | No Significant Hit | - | - |