Skip to main content

Table 1 Treatment Contrasts

From: Gene expression profiling of long-lived dwarf mice: longevity-associated genes and relationships with diet, gender and aging

Contrast Symbol

Treatment A

Treatment B

snell5a

Pit1dw/dwmales, age 4–6 months, n = 4

Pit1dw/?control males, age 4–6 months, n = 4

snell25a

Pit1dw/dwmales, age 24–26 months, n = 3

Pit1dw/?control males, age 24–26 months, n = 3

ames5Ab

Prop1df/dfmales, age 4–6 months, n = 5

Prop1+/+ control males, age 4–6 months, n = 5

ames13Ab

Prop1df/dfmales, age 12–14 months, n = 5

Prop1+/+ control males, age 12–14 months, n = 5

ames25Ab

Prop1df/dfmales, age 24–27 months, n = 5

Prop1+/+ control males, age 24–27 months, n = 5

ames3Bc

Prop1df/dfmales, age 3 months, n = 3

Prop1+/+ control males, age 3 months, n = 5

ames6Bc

Prop1df/dfmales, age 6 months, n = 3

Prop1+/+ control males, age 6 months, n = 5

ames12Bc

Prop1df/dfmales, age 12 months, n = 3

Prop1+/+ control males, age 12 months, n = 5

ames24Bc

Prop1df/dfmales, age 24 months, n = 3

Prop1+/+ control males, age 24 months, n = 5

little3c

Ghrhrlit/litmales, age 3 months, n = 3

Ghrhrlit/+males, age 3 months, n = 3

little6c

Ghrhrlit/litmales, age 6 months, n = 3

Ghrhrlit/+males, age 6 months, n = 3

little12c

Ghrhrlit/litmales, age 12 months, n = 3

Ghrhrlit/+males, age 12 months, n = 3

little24c

Ghrhrlit/litmales, age 24 months, n = 3

Ghrhrlit/+males, age 24 months, n = 3

GHR-KOd

GHR(-/-) males, age 42 days, n = 3

wild type males, age 42 days, n = 3

GHR-KI1d

GHR knock-in mutant 569, males, age 42 days, n = 3

wild type males, age 42 days, n = 3

GHR-KI2d

GHR knock-in mutant 391, males, age 42 days, n = 3

wild type males, age 42 days, n = 3

B6e

C57BL/6J (B6) females, age 2 months, n = 3 (20–30% reduced serum IGF-I)

C3H/HeJ (C3H) females, age 2 months, n = 3

Genderf

wild type females, age 3–6 months, n = 6

wild type males, age 3–6 months, n = 6

cr(2,6)g

4 months of 30% calorie restriction, initiated age 2, tissue harvest age 6, wild type females, n = 8

wild type littermates of treatment A fed on control diet, n = 7

cr(2,6)dfg

4 months of 30% calorie restriction, initiated age 2, tissue harvest age 6, Prop1df/dffemales, n = 8

Prop1df/dffemale littermates of treatment A with control diet, n = 8

cr(20,22)h

2 months of 40% calorie restriction, initiated age 20, tissue harvest age 22, strain B6C3F1 males, n = 4

strain B6C3F1 males fed on control diet, tissue harvest age 22, n = 4

cr(5,22)h

17 months 40% calorie restriction, initiated age 5, tissue harvest age 22, strain B6C3F1 males, n = 4

strain B6C3F1 males fed on control diet, tissue harvest age 22, n = 4

meth

metformin, 2100 mg per kg diet, tissue harvest age 22, strain B6C3F1 males, n = 4

control diet, tissue harvest age 22, strain B6C3F1 males, n = 4

met(db/db)i

metformin, 400 mg/kg, C57BL/ksj – db/db males, n = 5

placebo, C57BL/ksj – db/db males, n = 5

gliph

glipizide, 1050 mg per kg diet, tissue harvest age 22, strain B6C3F1 males, n = 4

control diet, tissue harvest age 22, strain B6C3F1 males, n = 4

gmh

metformin & glipizide, met dose: 1050 mg per kg diet, glip dose: 525 mg per kg diet, tissue harvest age 22, strain B6C3F1 males, n = 4

control diet, tissue harvest age 22, strain B6C3F1 males, n = 4

rosh

rosiglitazone, 80 mg per kg diet, tissue harvest age 22, strain B6C3F1 males, n = 4

control diet, tissue harvest age 22, strain B6C3F1 males, n = 4

soyh

soy isoflavone extract, 0.25%, tissue harvest age 22, strain B6C3F1 males, n = 4

control diet, tissue harvest age 22, strain B6C3F1 males, n = 4

lowfat1j

4.5% fat diet by weight, congenic C57BL/6J males, n = 3

21% fat diet by weight, congenic C57BL/6J males, n = 3

lowfat2k

very low fat diet, strain C57BL/6J males, n = 5

normal diet, strain C57BL/6J males, n = 5

agel

age 4 months, wild type, n = 4

age 32 months, wild type, n = 4

  1. Each contrast corresponds to a test of differential expression and set of genes identified as significantly upregulated or downregulated. The A column lists treatments known or hypothesized to be associated with increased lifespan. The B column lists comparable control treatments associated with normal lifespan. All contrasts were of the form A – B, such that upregulated genes exhibit increased expression in treatment A (relative to treatment B) while downregulated genes exhibit decreased expression in treatment A (relative to treatment B). The RNA source for all treatments was liver and the value n refers to the number of independent biological replicates available for each treatment.
  2. aGSE3129, MG-U74Av2, Boyleston et al. [20]
  3. bGSE3150, MG 430 2.0, Boyleston et al. [20]
  4. cEMEXP153, MOE 430A, Amador-Noguez et al. [19]
  5. dGSE988, MG-U74Av2, Rowland et al. [26]
  6. eGSE5959, MG-U74Av2, Adamo et al. [27]
  7. fEMEXP347, MOE 430A, Amador-Noguez et al. [87]
  8. gGSE1093, MG-U74Av2, Tsuchiya et al. [24]
  9. hGSE2431, MG-U74Av2, Dhahbi et al. [28]
  10. iEMEXP490, MG-U74Av2, Heishi et al. [88]
  11. jGSE363, MG-U74Av2, Recinos et al. [89]
  12. kGSE3889, MG 430 2.0, Flowers et al. [90]
  13. lEMEXP839, MG 430 2.0, Niedernhofer et al. [91]