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Table 1 Overview of Libraries

From: EST analysis on pig mitochondria reveal novel expression differences between developmental and adult tissues

Lib name Tissue (Animals) Description Reads
amn Amnion (S) -- 126
aor Aorta (M) -- 99
bla Bladder (M) -- 244
nbm* Bone marrow (S) 115 days, bone marrow 135
cbe Brain (M) Cerebellum 325
cbr Brain (B) Brain (cortex) 1067
fco Brain (M) Frontal cortex 410
hyp Brain (S) Hypothalamus 1153
pgl Brain (M) Pituitary gland 242
ecc* Brain (S) F 50 days, cortex 384
ece* Brain (S) F 50 days, cerebellum 206
fce* Brain (S) F 100, cerebellum 192
fcc* Brain (S) F 107, cortex cerebri 408
fhi* Brain (S) F 107 Hippocampus 662
cbl Haemopoetic (B) Blood 200
jca Cartillage (S) Joint capsule 327
nca* Cartillage (S) 115 days, cartilage 389
pan Endocrine glands (M) Pancreas 60
ret Eye (M) Retina 901
eye* Eye (S) F 50, eye 174
fat Fat (M) Fat 742
che Heart (B) -- 40
hea Heart (M) -- 974
hlv Heart (S) Left ventricle 2103
cje Intestine (B) Jejunum 0
col Intestine (S) Large intest, colon asc. 342
duo Intestine (S) Small intest, duodenum 289
ill Intestine (S) Small intest, illeum 147
jej Intestine (S) Small intest, jejunum 629
lin Intestine (M) Large intestine 1109
sin Intestine (M) Small intestine 313
eje* Intestine (S) F 50, Jejunum 521
nco* Intestine (S) 115 days, colon 548
nje* Intestine (S) 115 days, jejunum 460
cki Kidney (B) -- 10
kid Kidney (M) -- 405
cli Liver (B) -- 223
liv Liver (M) -- 100
eli* Liver (S) F 50, liver 113
fli* Liver (S) F 100, liver 95
clu Lung (B) -- 313
lun Lung (M) -- 176
elu* Lung (S) F 50 days, lung 48
nlu* Lung (S) 115 days, lung 239
cly Lymphatic gland (B) -- 287
lyg Lymphatic gland (M) -- 418
lnt Lymphatic gland (S) -- 315
cga Mammary gland (B) -- 69
mcp Mammary gland (S) Mammae, collostrum prod 257
mga Mammary gland (M) 7 days after weaning 112
mgm Mammary gland (M) 14 days after birth 81
mgp Mammary gland (M) 7 days pre birth 81
med Mediastinum (S) -- 480
bfe Muscles (M) M. biceps femoris 1738
ctl Muscles (B) Tenderloin 420
isp Muscles (M) M. infraspinatus 1530
ldo Muscles (M) M. longissimus dorsi 832
mas Muscles (S) M. masseter 1214
sme Muscles (M) M. semimembranosus 137
ssp Muscles (M) M. supraspinatus 806
ste Muscles (M) M. semitendinosus 711
tbr Muscles (M) M. triceps brachii 1314
vin Muscles (M) M. vastus intermedius 255
ese* Muscles (S) F 50, M. semitendinosus 279
nms* Muscles (S) 115 days, M. semitendinosus 745
gul Oesophagus (M) -- 291
ova Ovary (M) -- 178
cov Ovary (S) -- 363
pla Placenta (M) -- 15
pro Prostata (M) -- 128
rec Rectum (M) -- 393
cmu Rhinal mucosal membrane (B) -- 5
nmm* Rhinal mucosal membrane (S) 115 days, mucosal memb. 505
sag Salivary gland (M) -- 628
csk Skin (B) -- 19
ski Skin (M) -- 312
ton Skin (S) Tip of tongue, mucosa 659
eep* Skin (S) F 50, epidermis 53
eru* Skin (S) F 50, regium bilicalis 229
nep* Skin (S) 115 days, epidermis 143
spc Spinal cord (M) Spinal cord 570
ebs* Spinal cord (S) F 50 days, brain stem 408
fbs* Spinal cord (S) F 107 Brain stem 780
spl Spleen (M) -- 126
csp Spleen (B) -- 185
cst Stomach (B) -- 3
sto Stomach (M) -- 7
sug Suprarenal glands (M) -- 424
cag Suprarenal glands (B) Adrenal gland 316
cte Testicle (B) -- 2
tes Testicle (M) -- 70
cty Thyroid glands (B) -- 462
thg Thyroid glands (M) -- 439
pty Thyroid glands (S) Piglet 2 days, thymus 288
fry* Thyroid glands (S) F 100, thymus 216
tra Trachea (M) -- 336
ute Uterus (S) -- 380
cut Uterus (B) -- 6
  1. *: Developmental tissue.
  2. †: Is a normalized library.
  3. •: Ignored in expression analysis (see materials and methods).
  4. ‡: Likely to be heavily contaminated by liver ESTs.
  5. The generated cDNA libraries, representing 35 tissues. They are here shown as two (overlapping) sets, a physiological and a developmental set. The column "Libname" gives three letter code for the library, "Tissue" indicates the overall tissue the library has been generated from, where "(Animals)" indicates whether the library has been generated from a single (S or B) or multiple (M) animals. Libraries listed with (M) and (S) represent the pig breeds (mostly cross breeds) used in the Danish breeding (ie. Landrace, Yorkshire, Duroc and Hampshire), whereas the libraries listed with (B) present Chinese pig breeds. "Description" provides a short description. The column "Reads" show the number of mitochondrial reads that went into that library after cleaning. The F NN label refers to fetal tissue, NN days old, eg. F 50 libraries are tissues from 50 days old fetuses.