Table 1 Overview of Libraries
Lib name | Tissue (Animals) | Description | Reads |
|---|---|---|---|
amn | Amnion (S) | -- | 126 |
aor | Aorta (M) | -- | 99 |
bla | Bladder (M) | -- | 244 |
nbm* | Bone marrow (S) | 115 days, bone marrow | 135 |
cbe | Brain (M) | Cerebellum | 325 |
cbr• | Brain (B) | Brain (cortex) | 1067 |
fco | Brain (M) | Frontal cortex | 410 |
hyp | Brain (S) | Hypothalamus | 1153 |
pgl | Brain (M) | Pituitary gland | 242 |
ecc* | Brain (S) | F 50 days, cortex | 384 |
ece* | Brain (S) | F 50 days, cerebellum | 206 |
fce* | Brain (S) | F 100, cerebellum | 192 |
fcc* | Brain (S) | F 107, cortex cerebri | 408 |
fhi* | Brain (S) | F 107 Hippocampus | 662 |
cbl• | Haemopoetic (B) | Blood | 200 |
jca | Cartillage (S) | Joint capsule | 327 |
nca* | Cartillage (S) | 115 days, cartilage | 389 |
pan• | Endocrine glands (M) | Pancreas | 60 |
ret | Eye (M) | Retina | 901 |
eye* | Eye (S) | F 50, eye | 174 |
fat | Fat (M) | Fat | 742 |
che | Heart (B) | -- | 40 |
hea | Heart (M) | -- | 974 |
hlv | Heart (S) | Left ventricle | 2103 |
cje | Intestine (B) | Jejunum | 0 |
col | Intestine (S) | Large intest, colon asc. | 342 |
duo | Intestine (S) | Small intest, duodenum | 289 |
ill | Intestine (S) | Small intest, illeum | 147 |
jej | Intestine (S) | Small intest, jejunum | 629 |
lin | Intestine (M) | Large intestine | 1109 |
sin | Intestine (M) | Small intestine | 313 |
eje* | Intestine (S) | F 50, Jejunum | 521 |
nco* | Intestine (S) | 115 days, colon | 548 |
nje* | Intestine (S) | 115 days, jejunum | 460 |
cki | Kidney (B) | -- | 10 |
kid | Kidney (M) | -- | 405 |
cli | Liver (B) | -- | 223 |
liv | Liver (M) | -- | 100 |
eli* | Liver (S) | F 50, liver | 113 |
fli* | Liver (S) | F 100, liver | 95 |
clu | Lung (B) | -- | 313 |
lun‡ | Lung (M) | -- | 176 |
elu* | Lung (S) | F 50 days, lung | 48 |
nlu* | Lung (S) | 115 days, lung | 239 |
cly | Lymphatic gland (B) | -- | 287 |
lyg | Lymphatic gland (M) | -- | 418 |
lnt | Lymphatic gland (S) | -- | 315 |
cga | Mammary gland (B) | -- | 69 |
mcp | Mammary gland (S) | Mammae, collostrum prod | 257 |
mga | Mammary gland (M) | 7 days after weaning | 112 |
mgm• | Mammary gland (M) | 14 days after birth | 81 |
mgp | Mammary gland (M) | 7 days pre birth | 81 |
med | Mediastinum (S) | -- | 480 |
bfe | Muscles (M) | M. biceps femoris | 1738 |
ctl• | Muscles (B) | Tenderloin | 420 |
isp | Muscles (M) | M. infraspinatus | 1530 |
ldo | Muscles (M) | M. longissimus dorsi | 832 |
mas | Muscles (S) | M. masseter | 1214 |
sme | Muscles (M) | M. semimembranosus | 137 |
ssp | Muscles (M) | M. supraspinatus | 806 |
ste | Muscles (M) | M. semitendinosus | 711 |
tbr | Muscles (M) | M. triceps brachii | 1314 |
vin | Muscles (M) | M. vastus intermedius | 255 |
ese* | Muscles (S) | F 50, M. semitendinosus | 279 |
nms* | Muscles (S) | 115 days, M. semitendinosus | 745 |
gul | Oesophagus (M) | -- | 291 |
ova | Ovary (M) | -- | 178 |
cov | Ovary (S) | -- | 363 |
pla†| Placenta (M) | -- | 15 |
pro | Prostata (M) | -- | 128 |
rec | Rectum (M) | -- | 393 |
cmu | Rhinal mucosal membrane (B) | -- | 5 |
nmm* | Rhinal mucosal membrane (S) | 115 days, mucosal memb. | 505 |
sag | Salivary gland (M) | -- | 628 |
csk | Skin (B) | -- | 19 |
ski | Skin (M) | -- | 312 |
ton | Skin (S) | Tip of tongue, mucosa | 659 |
eep* | Skin (S) | F 50, epidermis | 53 |
eru* | Skin (S) | F 50, regium bilicalis | 229 |
nep* | Skin (S) | 115 days, epidermis | 143 |
spc | Spinal cord (M) | Spinal cord | 570 |
ebs* | Spinal cord (S) | F 50 days, brain stem | 408 |
fbs* | Spinal cord (S) | F 107 Brain stem | 780 |
spl | Spleen (M) | -- | 126 |
csp | Spleen (B) | -- | 185 |
cst | Stomach (B) | -- | 3 |
sto | Stomach (M) | -- | 7 |
sug | Suprarenal glands (M) | -- | 424 |
cag | Suprarenal glands (B) | Adrenal gland | 316 |
cte | Testicle (B) | -- | 2 |
tes | Testicle (M) | -- | 70 |
cty | Thyroid glands (B) | -- | 462 |
thg | Thyroid glands (M) | -- | 439 |
pty | Thyroid glands (S) | Piglet 2 days, thymus | 288 |
fry* | Thyroid glands (S) | F 100, thymus | 216 |
tra | Trachea (M) | -- | 336 |
ute | Uterus (S) | -- | 380 |
cut | Uterus (B) | -- | 6 |