|
Lib name
|
Tissue (Animals)
|
Description
|
Reads
|
|---|
|
amn
|
Amnion (S)
|
--
|
126
|
|
aor
|
Aorta (M)
|
--
|
99
|
|
bla
|
Bladder (M)
|
--
|
244
|
|
nbm*
|
Bone marrow (S)
|
115 days, bone marrow
|
135
|
|
cbe
|
Brain (M)
|
Cerebellum
|
325
|
|
cbr•
|
Brain (B)
|
Brain (cortex)
|
1067
|
|
fco
|
Brain (M)
|
Frontal cortex
|
410
|
|
hyp
|
Brain (S)
|
Hypothalamus
|
1153
|
|
pgl
|
Brain (M)
|
Pituitary gland
|
242
|
|
ecc*
|
Brain (S)
|
F 50 days, cortex
|
384
|
|
ece*
|
Brain (S)
|
F 50 days, cerebellum
|
206
|
|
fce*
|
Brain (S)
|
F 100, cerebellum
|
192
|
|
fcc*
|
Brain (S)
|
F 107, cortex cerebri
|
408
|
|
fhi*
|
Brain (S)
|
F 107 Hippocampus
|
662
|
|
cbl•
|
Haemopoetic (B)
|
Blood
|
200
|
|
jca
|
Cartillage (S)
|
Joint capsule
|
327
|
|
nca*
|
Cartillage (S)
|
115 days, cartilage
|
389
|
|
pan•
|
Endocrine glands (M)
|
Pancreas
|
60
|
|
ret
|
Eye (M)
|
Retina
|
901
|
|
eye*
|
Eye (S)
|
F 50, eye
|
174
|
|
fat
|
Fat (M)
|
Fat
|
742
|
|
che
|
Heart (B)
|
--
|
40
|
|
hea
|
Heart (M)
|
--
|
974
|
|
hlv
|
Heart (S)
|
Left ventricle
|
2103
|
|
cje
|
Intestine (B)
|
Jejunum
|
0
|
|
col
|
Intestine (S)
|
Large intest, colon asc.
|
342
|
|
duo
|
Intestine (S)
|
Small intest, duodenum
|
289
|
|
ill
|
Intestine (S)
|
Small intest, illeum
|
147
|
|
jej
|
Intestine (S)
|
Small intest, jejunum
|
629
|
|
lin
|
Intestine (M)
|
Large intestine
|
1109
|
|
sin
|
Intestine (M)
|
Small intestine
|
313
|
|
eje*
|
Intestine (S)
|
F 50, Jejunum
|
521
|
|
nco*
|
Intestine (S)
|
115 days, colon
|
548
|
|
nje*
|
Intestine (S)
|
115 days, jejunum
|
460
|
|
cki
|
Kidney (B)
|
--
|
10
|
|
kid
|
Kidney (M)
|
--
|
405
|
|
cli
|
Liver (B)
|
--
|
223
|
|
liv
|
Liver (M)
|
--
|
100
|
|
eli*
|
Liver (S)
|
F 50, liver
|
113
|
|
fli*
|
Liver (S)
|
F 100, liver
|
95
|
|
clu
|
Lung (B)
|
--
|
313
|
|
lun‡
|
Lung (M)
|
--
|
176
|
|
elu*
|
Lung (S)
|
F 50 days, lung
|
48
|
|
nlu*
|
Lung (S)
|
115 days, lung
|
239
|
|
cly
|
Lymphatic gland (B)
|
--
|
287
|
|
lyg
|
Lymphatic gland (M)
|
--
|
418
|
|
lnt
|
Lymphatic gland (S)
|
--
|
315
|
|
cga
|
Mammary gland (B)
|
--
|
69
|
|
mcp
|
Mammary gland (S)
|
Mammae, collostrum prod
|
257
|
|
mga
|
Mammary gland (M)
|
7 days after weaning
|
112
|
|
mgm•
|
Mammary gland (M)
|
14 days after birth
|
81
|
|
mgp
|
Mammary gland (M)
|
7 days pre birth
|
81
|
|
med
|
Mediastinum (S)
|
--
|
480
|
|
bfe
|
Muscles (M)
|
M. biceps femoris
|
1738
|
|
ctl•
|
Muscles (B)
|
Tenderloin
|
420
|
|
isp
|
Muscles (M)
|
M. infraspinatus
|
1530
|
|
ldo
|
Muscles (M)
|
M. longissimus dorsi
|
832
|
|
mas
|
Muscles (S)
|
M. masseter
|
1214
|
|
sme
|
Muscles (M)
|
M. semimembranosus
|
137
|
|
ssp
|
Muscles (M)
|
M. supraspinatus
|
806
|
|
ste
|
Muscles (M)
|
M. semitendinosus
|
711
|
|
tbr
|
Muscles (M)
|
M. triceps brachii
|
1314
|
|
vin
|
Muscles (M)
|
M. vastus intermedius
|
255
|
|
ese*
|
Muscles (S)
|
F 50, M. semitendinosus
|
279
|
|
nms*
|
Muscles (S)
|
115 days, M. semitendinosus
|
745
|
|
gul
|
Oesophagus (M)
|
--
|
291
|
|
ova
|
Ovary (M)
|
--
|
178
|
|
cov
|
Ovary (S)
|
--
|
363
|
|
pla†
|
Placenta (M)
|
--
|
15
|
|
pro
|
Prostata (M)
|
--
|
128
|
|
rec
|
Rectum (M)
|
--
|
393
|
|
cmu
|
Rhinal mucosal membrane (B)
|
--
|
5
|
|
nmm*
|
Rhinal mucosal membrane (S)
|
115 days, mucosal memb.
|
505
|
|
sag
|
Salivary gland (M)
|
--
|
628
|
|
csk
|
Skin (B)
|
--
|
19
|
|
ski
|
Skin (M)
|
--
|
312
|
|
ton
|
Skin (S)
|
Tip of tongue, mucosa
|
659
|
|
eep*
|
Skin (S)
|
F 50, epidermis
|
53
|
|
eru*
|
Skin (S)
|
F 50, regium bilicalis
|
229
|
|
nep*
|
Skin (S)
|
115 days, epidermis
|
143
|
|
spc
|
Spinal cord (M)
|
Spinal cord
|
570
|
|
ebs*
|
Spinal cord (S)
|
F 50 days, brain stem
|
408
|
|
fbs*
|
Spinal cord (S)
|
F 107 Brain stem
|
780
|
|
spl
|
Spleen (M)
|
--
|
126
|
|
csp
|
Spleen (B)
|
--
|
185
|
|
cst
|
Stomach (B)
|
--
|
3
|
|
sto
|
Stomach (M)
|
--
|
7
|
|
sug
|
Suprarenal glands (M)
|
--
|
424
|
|
cag
|
Suprarenal glands (B)
|
Adrenal gland
|
316
|
|
cte
|
Testicle (B)
|
--
|
2
|
|
tes
|
Testicle (M)
|
--
|
70
|
|
cty
|
Thyroid glands (B)
|
--
|
462
|
|
thg
|
Thyroid glands (M)
|
--
|
439
|
|
pty
|
Thyroid glands (S)
|
Piglet 2 days, thymus
|
288
|
|
fry*
|
Thyroid glands (S)
|
F 100, thymus
|
216
|
|
tra
|
Trachea (M)
|
--
|
336
|
|
ute
|
Uterus (S)
|
--
|
380
|
|
cut
|
Uterus (B)
|
--
|
6
|
- *: Developmental tissue.
- †: Is a normalized library.
- •: Ignored in expression analysis (see materials and methods).
- ‡: Likely to be heavily contaminated by liver ESTs.
- The generated cDNA libraries, representing 35 tissues. They are here shown as two (overlapping) sets, a physiological and a developmental set. The column "Libname" gives three letter code for the library, "Tissue" indicates the overall tissue the library has been generated from, where "(Animals)" indicates whether the library has been generated from a single (S or B) or multiple (M) animals. Libraries listed with (M) and (S) represent the pig breeds (mostly cross breeds) used in the Danish breeding (ie. Landrace, Yorkshire, Duroc and Hampshire), whereas the libraries listed with (B) present Chinese pig breeds. "Description" provides a short description. The column "Reads" show the number of mitochondrial reads that went into that library after cleaning. The F NN label refers to fetal tissue, NN days old, eg. F 50 libraries are tissues from 50 days old fetuses.
