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Table 1 Selected GO categories associated with genes differentially expressed in the cell lines AR42J versus NRK52E.

From: Optimization of cDNA microarrays procedures using criteria that do not rely on external standards

GO number GO term A B AUB BÚA AÚB Proportion
GO:0008150 biological process 724 233 233 491 0 3.1
GO:0008152 metabolic process 459 135 135 324 0 3.4
GO:0032502 developmental process 246 91 91 155 0 2.7
GO:0007154 cell communication 202 69 69 133 0 2.9
GO:0050896 response to stimulus 165 64 64 101 0 2.6
GO:0048468 cell development 112 38 38 74 0 2.9
GO:0006950 response to stress 101 32 32 69 0 3.2
GO:0009056 catabolic process 65 30 30 35 0 2.2
GO:0007049 cell cycle 60 13 13 47 0 4.6
GO:0016265 death 60 18 18 42 0 3.3
GO:0006928 cell motility 51 17 17 34 0 3.0
GO:0040007 growth 42 19 19 23 0 2.2
GO:0006952 defence response 32 7 7 25 0 4.6
GO:0019725 cell homeostasis 30 12 12 18 0 2.5
  1. A: Gene list generated with no background correction and weight based filtering. B: Gene list generated with dampened Edwards background correction and weight based filtering. AUB: number of genes differentially expressed in both gene list A and B. AÚB: number of genes differentially expressed in gene list A but not in gene list B. BÚA: number of genes differentially expressed in gene list B but not in gene list A. Proportion: number of genes in A/number of genes in B. The genes were annotated using GeneTools [30] according to UniGen build #163. All GO categories associated with more than five genes are shown in Additional file 2.