Skip to main content

Table 6 Gene Ontology (GO) classifications of TUGs from oil palm according to their involvement in biological processes, molecular functions and cellular localizations

From: Analysis and functional annotation of expressed sequence tags (ESTs) from multiple tissues of oil palm (Elaeis guineensis Jacq.)

 

Percentage in each cDNA library (%)

Gene ontology (GO) classification

Root

Shoot apical meristem

Young flower

Mature flower

Suspension cell culture

Zygotic embryo

Overall

Biological processes

       

Biosynthesis

9

10

9

9

7

13

9

Catabolism

2

1

2

2

4

3

2

Cell organization and biogenesis

3

3

4

4

3

3

3

Cellular metabolism

23

23

23

23

22

22

23

Establishment of localization

7

6

5

5

7

5

7

Macrmolecule metabolism

16

17

18

19

17

19

16

Nitrogen compound metabolism

2

2

1

1

2

1

2

Primary metabolism

21

22

22

22

21

22

21

Protein localization

1

1

1

1

1

3

1

Regulation of cellular physiological process

2

2

2

2

2

1

2

Regulation of metabolism

2

2

2

2

2

< 1

2

Response to chemical stimulus

1

2

1

1

1

1

1

Transport

7

6

5

5

6

5

7

Others

4

3

5

4

5

2

4

Molecular function

       

Antioxidant activity

1

1

1

2

3

1

1

Binding

       

   Cofactor binding

2

2

1

2

2

3

2

   Ion binding

3

9

11

12

12

13

11

   Nucleic acid binding

9

15

15

13

11

12

11

   Nucleotide binding

11

15

15

12

9

11

13

   Protein binding

6

6

8

5

6

4

5

Catalytic activity

       

   Hydrolase activity

11

8

10

10

10

8

11

   Isomerase activity

2

2

2

2

2

2

2

   Ligase activity

3

2

3

2

2

1

2

   Lyase activity

3

2

1

2

3

3

3

   Oxidoreductase activity

9

7

5

7

11

5

9

   Peroxidase activity

1

1

1

1

2

0

1

   Transferase activity

10

10

10

9

11

11

13

Structural constituent of ribosome

9

9

9

11

6

14

7

Translation regulator activity

1

3

3

2

1

4

2

Transcription regulator activity

1

2

1

1

2

0

1

Transport

       

   Carrier activity

2

2

1

1

2

1

2

   Ion transport

3

2

1

1

2

1

3

Others

13

2

2

5

3

7

1

Cellular component

       

External encapsulating structure

< 1

1

1

1

1

0

1

Intracellular

39

43

42

43

40

39

40

Intracellular part

37

41

40

42

39

38

38

Membrane

12

8

9

7

11

11

11

Membrane bound vesicle

1

1

1

1

2

1

1

Membrane part

7

6

5

5

6

6

7

Organelle inner membrane

1

< 1

1

< 1

< 1

1

1

Others

3

< 1

1

1

1

4

1

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us