Table 2 Putative TCS gene clusters in the genomes of P. syringae pv. syringae B728a, pv. tomato DC3000 and pv. phaseolicola 1448A.
From: Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae
Histidine kinase/Response regulator | Protein namea | Organizationb | HK type | RR type | ||
|---|---|---|---|---|---|---|
Psy B728a | Pto DC3000 | Pph 1448A | ||||
PSYR0064/0063 | PSPTO0126/0127 | PSPPH0070/0069 | FimS/AlgR | HR | LytS-like | LytR-like |
PSYR0259/0258 | PSPTO0329/0328 | PSPPH0247/0246 | EnvZ/OmpR | RH | IA | OmpR-like |
PSYR0264/0263 | PSPTO0335/0334 | PSPPH0253/0252 | --/AlgB | RH | IA | NtrC-like |
PSYR0723/0722 | PSPTO0824/0823 | PSPPH0737/0736 | PilS/PilR | RH | IC | NtrC-like |
PSYR0786/0788 | PSPTO0913/0915 | PSPPH0805/0807 | CheA1/CheY1 | RHc | CheA-like | Stand-alone REC |
PSYR0832/0831 | PSPTO0965/0964 | PSPPH0858/0857 | --/-- | HR | IC | NtrC-like |
PSYR1100/1099 | --/-- | PSPPH1168/1167 | --/-- | RHd | IB | PleD-like |
PSYR1112/1111 | PSPTO1291/1290 | PSPPH1180/1179 | --/GltR | RH | IA | OmpR-like |
PSYR1126/1127 | PSPTO1306/1307 | PSPPH1194/1195 | --/-- | RH | IA | OmpR-like |
PSYR1498/1497 | --/-- | --/-- | CopS/CopR | RH | IA | OmpR-like |
PSYR1941/1940 | PSPTO2131/2130 | PSPPH1907/1906 | --/-- | HR | III | NarL-like |
PSYR2031/2032 | PSPTO2222/2223 | PSPPH2003/2004 | RhpS/RhpR | RH | IA | OmpR-like |
PSYR2050/2051 | PSPTO2245/2246 | PSPPH2021/2022 | KdpD/KdpE | HR | IA | OmpR-like |
PSYR2374/2375 | PSPTO2642/2643 | PSPPH2510/--e | --/-- | RH | IA | OmpR-like |
PSYR2385/2384 | PSPTO2652/2651 | --/-- | BphP2/-- | HR | GAF-HK | Stand-alone REC |
PSYR2867/2868 | PSPTO2983/--e | PSPPH2377/2376 | BaeS2/BaeS1 | HR | IA | OmpR-like |
PSYR3085/3084 | --/-- | PSPPH2980/--e | --/-- | RH | IA | OmpR-like |
PSYR3128/3127 | PSPTO3298/3297 | PSPPH3041/3040 | --/-- | RH | IA | OmpR-like |
PSYR3211/3212 | PSPTO3380/3381 | PSPPH3126/3127 | --/-- | RH | IA | OmpR-like |
PSYR3375/3374 | PSPTO3604/3603 | PSPPH3295/3294 | --/-- | RH | IA | OmpR-like |
PSYR3434/3436 | PSPTO1982/1980 | PSPPH3360/3362 | CheA2/CheY2 | RHc | CheA-like | Stand-alone REC |
PSYR3460/3459 | PSPTO1955/1956 | PSPPH3386/3385 | FleS/FleR | HR | IC | NtrC-like |
PSYR3512/3511 | PSPTO1893/1894 | PSPPH3454/3453 | QseC/QseB | RH | IA | OmpR-like |
PSYR3708/3709 | PSPTO1680/1679 | PSPPH3729/3730 | PhoQ/PhoP | RH | IA | OmpR-like |
PSYR3715/3716 | PSPTO1673/1672 | PSPPH3736/3737 | --/RstA | RH | IA | OmpR-like |
PSYR3792/3793 | --/-- | PSPPH1461/1460 | --/CpxR | RH | IA | OmpR-like |
PSYR3912/3913 | PSPTO4175/4176 | PSPPH3906/3907 | --/-- | HR | IC | NtrC-like |
PSYR3964/3965 | PSPTO4230/4231 | PSPPH3961/3962 | TctE/TctD | RH | IA | OmpR-like |
PSYR3994/3995 | PSPTO4291/4292 | PSPPH4001/4002 | --/-- | HR | IC | NtrC-like |
PSYR4069/4070 | PSPTO4373/4374 | PSPPH4074/4075 | ColS/ColR | RH | IA | OmpR-like |
PSYR4231/4230 | PSPTO4554/4553 | PSPPH4256/4255 | --/-- | HR | IC | PrrA-like |
PSYR4619/4618 | PSPTO0559/0560 | PSPPH0641/0642 | --/-- | HR | III | NarL-like |
PSYR4799/4800 | PSPTO0379/0378 | PSPPH4827/4828 | --/-- | RH | IA | OmpR-like |
PSYR4821/4822 | PSPTO0353/0352 | PSPPH4852/4853 | NtrB/NtrC | HR | IC | NtrC-like |
PSYR4937/4938 | PSPTO5398/5399 | PSPPH0147/0146 | --/-- | HR | IC | NtrC-like |
PSYR5033/5032 | PSPTO5478/5477 | PSPPH5115/5114 | PhoR/PhoB | RH | IA | OmpR-like |
PSYR5089/5088 | PSPTO5549/5548 | PSPPH5172/5171 | --/-- | HR | IC | LytR-like |
--/-- | PSPTO0785/0786 | --/-- | --/-- | HR | IA | OmpR-like |
--/-- | PSPTO4705/4704 | --/-- | CorS/CorR | RH | IB | NarL-like |
--/-- | PSPTO5573/5574e | --/-- | --/-- | HR | IC | OmpR-like |