Table 3 Orphan HK and RR genes in the genomes of P. syringae pv. syringae B728a, pv. tomato DC3000 and pv. phaseolicola 1448A.
From: Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae
P. syringae pv. syringae B728a | P. syringae pv. tomato DC3000 | P. syringae pv. phaseolicola 1448A | HK/RR type |
|---|---|---|---|
Orphan HKs | |||
PSYR1918 | PSPTO2123 | PSPPH1874 | GAF-HK |
PSYR2978 | PSPTO3111 | PSPPH2262 | IC |
PSYR3060 | PSPTO3195 | PSPPH2185 | IC |
PSYR3504/BphP1 | PSPTO1902 | PSPPH3446 | GAF-HK |
PSYR3591 | PSPTO1803 | PSPPH3550 | IA |
PSYR3773 | PSPTO1606 | PSPPH1480 | GAF-HK |
PSYR3774 | PSPTO1605 | PSPPH1479 | GAF-HK |
PSYR4089 | PSPTO4395 | PSPPH4095 | IC |
PSYR4339 | PSPTO4796 | PSPPH4381 | IB |
PSYR4373 | PSPTO4833 | PSPPH4416 | IC |
PSYR4439 | PSPTO4896 | PSPPH4481 | GAF-HK |
Orphan RRs | |||
PSYR0089 | PSPTO0303 | PSPPH0094 | Stand-alone REC |
PSYR0488/PilG | PSPTO5034 | PSPPH0479 | Stand-alone REC |
PSYR0489/PilH | PSPTO5033 | PSPPH0480 | Stand-alone REC |
PSYR0509 | PSPTO5014 | PSPPH0499 | PleD-like |
PSYR0781/CheB1 | PSPTO0908 | PSPPH0800 | CheB-like |
PSYR0886 | PSPTO1039 | PSPPH0923 | CheC-like |
PSYR1098 | PSPTO1278 | PSPPH1166 | PleD-like |
PSYR1139 | PSPTO1323 | PSPPH1207 | CheW-like |
PSYR1190/HrpR | PSPTO1379 | PSPPH1270 | NtrC-like |
PSYR1191/HrpS | PSPTO1380 | PSPPH1271 | NtrC-like |
PSYR1293 | PSPTO1483 | PSPPH1363 | VieA-like |
PSYR1294 | PSPTO1484 | PSPPH1364 | NarL-like |
PSYR1308/CheB2 | PSPTO1498 | PSPPH3876 | CheB-like |
PSYR1309/WspR | PSPTO1499 | PSPPH3875 | PleD-like |
PSYR1384 | PSPTO4027 | PSPPH3800 | NarL-like |
PSYR1912 | PSPTO2117 | PSPPH1867 | RsbU-like |
PSYR1938 | PSPTO2128 | PSPPH1904 | Stand-alone REC |
PSYR2114 | -- | -- | NarL-like |
PSYR2115 | PSPTO2330 | -- | Stand-alone REC |
PSYR2449 | PSPTO2716 | PSPPH2605 | Stand-alone REC |
PSYR2897/GacA | PSPTO3024 | PSPPH2328 | NarL-like |
PSYR2939 | -- | -- | AmiR-like |
PSYR3091 | PSPTO3245 | PSPPH2995 | OmpR-like |
PSYR3299 | PSPTO3526 | PSPPH3220 | NarL-like |
PSYR3433/CheB3 | PSPTO1983 | PSPPH3359 | CheB-like |
PSYR3451 | PSPTO1964 | PSPPH3377 | RsbU-like |
PSYR3461/FleQ | PSPTO1954 | PSPPH3387 | NtrC-like |
PSYR3486 | PSPTO1927 | PSPPH3413 | CheW-like |
PSYR3496 | PSPTO1911 | PSPPH3428 | VieB-like |
PSYR3589 | PSPTO1806 | PSPPH3547 | OmpR-like |
PSYR3890 | PSPTO4151 | PSPPH1374 | NarL-like |
PSYR4376 | PSPTO4836 | PSPPH4419 | NarL-like |
PSYR4377 | PSPTO4837 | PSPPH4420 | PleD-like |
PSYR4388 | PSPTO4848 | PSPPH4431 | Stand-alone REC |
PSYR4701 | PSPTO0472 | PSPPH4737 | Stand-alone REC |
PSYR5036 | PSPTO5482 | PSPPH5118 | Stand-alone REC |
-- | PSPTO0897 | PSPPH4241 | NarL-like |
-- | PSPTO2329a | -- | Stand-alone REC |
-- | PSPTO4080 | -- | NarL-like |
-- | PSPTO4706/CorP | -- | NarL-like |
-- | -- | PSPPH0778 | NarL-like |