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Table 1 Effects of SeqClean on phred-treated EST against CVS or RVS form of the vector sequence

From: An optimized procedure greatly improves EST vector contamination removal

  SeqClean
  CVS RVS
Number of ESTs to trim 6035 6035
Number trashed 239 143
Number of incompletely trimmed ESTs 1118 2
% incomplete trimminga 18.5% 0.0%
  1. a % of incomplete trimming was obtained by dividing the number of incompletely trimmed ESTs by the number of ESTs to trim. For example, the percentage of incompletely trimmed ESTs in the CVS column was calculated as: 1118/6035 × 100%.