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Table 1 Origin of the 24 cyanobacterial genome sequences that were used to perform the bioinformatic evaluation of the presence of L-arginine-degrading pathways in cyanobacteria.

From: Bioinformatic evaluation of L-arginine catabolic pathways in 24 cyanobacteria and transcriptional analysis of genes encoding enzymes of L-arginine catabolism in the cyanobacterium Synechocystis sp. PCC 6803

Cyanobacterial strain Origin of genome sequence* Reference sequence GenBank Mbps %GC Proteins/RNAs
Marine species
Prochlorococcus marinus SS 120 European Union/Genoscope NC_005042 AE017126 1.75 36.4 1883/46
Prochlorococcus marinus MIT 9211 Craig Venter Institute NZ_AALP00000000 AALP00000000 1.84 39.7 2123/45
Prochlorococcus marinus MIT 9312 JGI/MIT/DOE NC_007577 CP000111 1.71 31.2 1810/45
Prochlorococcus marinus MIT9313 JGI/DOE NC_005071 BX548175 2.41 50.7 2269/55
Prochlorococcus marinus MED 4 JGI/DOE NC_005072 BX548174 1.70 30.8 1717/44
Prochlorococcus marinus NATL 2A JGI/MIT/DOE NC_007335 CP000095 1.84 35.1 1892/44
Synechococcus sp. WH 8102 JGI/DOE NC_005070 BX548020 2.44 59.4 2519/55
Synechococcus sp. CC 9902 JGI/DOE NC_007513 CP000097 2.24 54.2 2307/51
Synechococcus sp. RS 9917 Craig Venter Institute NZ_AANP00000000 AANP00000000 2.58 64.5 2770/50
Synechococcus sp. CC 9605 JGI/DOE NC_007516 CP000110 2.51 59.2 2645/54
Synechococcus sp. WH 5701 Craig Venter Institute NZ_AANO00000000 AANO00000000 3.04 65.4 3346/55
Synechococcus sp. WH 7805 Craig Venter Institute NZ_AAOK00000000 AAOK00000000 2.62 57.6 2883/51
Trichodesmium erythraeum IMS 101 WHOI/JGI/DOE NC_008312 CP000393 7.75 34.1 4451/48
Crocosphaera watsonii WH 8501 WHOI/JGI/DOE NZ_AADV00000000 AADV00000000 6.24 37.1 5958/38
Freshwater species
Synechococcus elongatus PCC 6301 Nagoya University NC_006576 AP008231 2.70 55.5 2527/55
Synechococcus elongatus PCC 7942 JGI/Texas A & M University/DOE NC_007604 CP000100 2.70 55.5 2612/53
Synechocystis sp. PCC 6803 Kazusa DNA Research Institute NC_000911 BA000022 3.57 47.7 3172/50
Gloeobacter violaceus PCC 7421 Kazusa DNA Research Institute NC_005125 BA000045 4.66 62.0 4430/52
Nostoc sp. PCC 7120 Kazusa DNA Research Institute NC_003272 BA000019 6.41 41.3 5366/64
Nostoc punctiforme PCC 73102 JGI/DOE NZ_AAAY00000000 AAAY00000000 9.02 41.4 7672/n.d.
Anabaena variabilis ATCC 29413 Missouri State University/JGI/DOE NC_007413 CP000117 6.37 41.4 5043/62
Thermosynechococcus elongatus BP-1 Kazusa DNA Research Institute NC_004113 BA000039 2.59 53.9 2476/49
Synechococcus Yellowstone A JA-3-3Ab TIGR NC_007775 CP000239 2.93 60.2 2760/55
Synechococcus Yellowstone B JA-2-3B'a (2–13) TIGR NC_007776 CP000240 3.05 58.5 2862/52
  1. *JGI, Joint Genome Research Institute; DOE, Department of Energy USA; WHOI, Woods Hole Oceanographic Institute; MIT, Massachusetts Institute of Technology; TIGR, The Institute for Genomic Research. The strain Prochlorococcus marinus SS 120 corresponds to Prochlorococcus marinus subsp. marinus str. CCMP 1375 and strain Prochlorococcus marinus MED 4 corresponds to Prochlorococcus marinus subsp.pastoris str. CCMP 1986 or CCMP 1378. Nostoc sp. PCC 7120 is synonymous to Anabaena sp. PCC 7120 as well as Anabaena cylindrica. N.d. = not detected.