Skip to main content

Table 1 Origin of the 24 cyanobacterial genome sequences that were used to perform the bioinformatic evaluation of the presence of L-arginine-degrading pathways in cyanobacteria.

From: Bioinformatic evaluation of L-arginine catabolic pathways in 24 cyanobacteria and transcriptional analysis of genes encoding enzymes of L-arginine catabolism in the cyanobacterium Synechocystis sp. PCC 6803

Cyanobacterial strain

Origin of genome sequence*

Reference sequence

GenBank

Mbps

%GC

Proteins/RNAs

Marine species

Prochlorococcus marinus SS 120

European Union/Genoscope

NC_005042

AE017126

1.75

36.4

1883/46

Prochlorococcus marinus MIT 9211

Craig Venter Institute

NZ_AALP00000000

AALP00000000

1.84

39.7

2123/45

Prochlorococcus marinus MIT 9312

JGI/MIT/DOE

NC_007577

CP000111

1.71

31.2

1810/45

Prochlorococcus marinus MIT9313

JGI/DOE

NC_005071

BX548175

2.41

50.7

2269/55

Prochlorococcus marinus MED 4

JGI/DOE

NC_005072

BX548174

1.70

30.8

1717/44

Prochlorococcus marinus NATL 2A

JGI/MIT/DOE

NC_007335

CP000095

1.84

35.1

1892/44

Synechococcus sp. WH 8102

JGI/DOE

NC_005070

BX548020

2.44

59.4

2519/55

Synechococcus sp. CC 9902

JGI/DOE

NC_007513

CP000097

2.24

54.2

2307/51

Synechococcus sp. RS 9917

Craig Venter Institute

NZ_AANP00000000

AANP00000000

2.58

64.5

2770/50

Synechococcus sp. CC 9605

JGI/DOE

NC_007516

CP000110

2.51

59.2

2645/54

Synechococcus sp. WH 5701

Craig Venter Institute

NZ_AANO00000000

AANO00000000

3.04

65.4

3346/55

Synechococcus sp. WH 7805

Craig Venter Institute

NZ_AAOK00000000

AAOK00000000

2.62

57.6

2883/51

Trichodesmium erythraeum IMS 101

WHOI/JGI/DOE

NC_008312

CP000393

7.75

34.1

4451/48

Crocosphaera watsonii WH 8501

WHOI/JGI/DOE

NZ_AADV00000000

AADV00000000

6.24

37.1

5958/38

Freshwater species

Synechococcus elongatus PCC 6301

Nagoya University

NC_006576

AP008231

2.70

55.5

2527/55

Synechococcus elongatus PCC 7942

JGI/Texas A & M University/DOE

NC_007604

CP000100

2.70

55.5

2612/53

Synechocystis sp. PCC 6803

Kazusa DNA Research Institute

NC_000911

BA000022

3.57

47.7

3172/50

Gloeobacter violaceus PCC 7421

Kazusa DNA Research Institute

NC_005125

BA000045

4.66

62.0

4430/52

Nostoc sp. PCC 7120

Kazusa DNA Research Institute

NC_003272

BA000019

6.41

41.3

5366/64

Nostoc punctiforme PCC 73102

JGI/DOE

NZ_AAAY00000000

AAAY00000000

9.02

41.4

7672/n.d.

Anabaena variabilis ATCC 29413

Missouri State University/JGI/DOE

NC_007413

CP000117

6.37

41.4

5043/62

Thermosynechococcus elongatus BP-1

Kazusa DNA Research Institute

NC_004113

BA000039

2.59

53.9

2476/49

Synechococcus Yellowstone A JA-3-3Ab

TIGR

NC_007775

CP000239

2.93

60.2

2760/55

Synechococcus Yellowstone B JA-2-3B'a (2–13)

TIGR

NC_007776

CP000240

3.05

58.5

2862/52

  1. *JGI, Joint Genome Research Institute; DOE, Department of Energy USA; WHOI, Woods Hole Oceanographic Institute; MIT, Massachusetts Institute of Technology; TIGR, The Institute for Genomic Research. The strain Prochlorococcus marinus SS 120 corresponds to Prochlorococcus marinus subsp. marinus str. CCMP 1375 and strain Prochlorococcus marinus MED 4 corresponds to Prochlorococcus marinus subsp.pastoris str. CCMP 1986 or CCMP 1378. Nostoc sp. PCC 7120 is synonymous to Anabaena sp. PCC 7120 as well as Anabaena cylindrica. N.d. = not detected.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us