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Table 8 Database entries of genes from 24 cyanobacterial genomes encoding putative L-arginine deiminases (D1), L-ornithine transcarbamoylases (D2), carbamate kinases (D3), L-ornithine transaminases (D4), and Δ1 pyrroline-5-carboxylate dehydrogenases (D5) of the L-arginine deiminase pathway.

From: Bioinformatic evaluation of L-arginine catabolic pathways in 24 cyanobacteria and transcriptional analysis of genes encoding enzymes of L-arginine catabolism in the cyanobacterium Synechocystis sp. PCC 6803

Enzyme D1 D2 D3 D4 D5
Marine species
Prochlorococcus marinus SS 120 n.d. Pro1337, Pro0262 n.d. Pro1375, Pro1626 Pro0374
Prochlorococcus marinus str. MIT 9211 n.d. P9211_0227, P9211_07567 n.d. P9211_02002, P9211_10217 P9211_07012
Prochlorococcus marinus MIT 9312 n.d. PMT9312_1357 n.d. PMT9312_1397, PMT9312_1565 PMT9312_0337
Prochlorococcus marinus MIT 9313 n.d. PMT0379, PMT1807 n.d. PMT0331, PMT1493 PMT0191
Prochlorococcus marinus MED 4 n.d. PMM1263, PMM0233 n.d. PMM1301, PMM1472 PMM0331
Prochlorococcus marinus NATL 2A n.d. PMN2S_0829 n.d. PMN2A_0867, PMN2A_1003 PMN2A_1709
Synechococcus sp. CC 9605 n.d. Syncc9605_0926, Syncc9605_0292, Syncc9605_2634 n.d. Syncc9605_0858, Syncc9605_2052, Syncc9605_0659 Syncc9605_0497
Synechococcus sp. CC 9902 n.d. Syncc9902_1482, Syncc9902_2261, Syncc9902_2051 n.d. Syncc9902_1534, Syncc9902_0620 Syncc9902_1838
Synechococcus sp. WH 8102 n.d. SYNW1586, SYNW2454, SYNW0296 n.d. SYNW1634, SYNW0629 SYNW1956
Synechococcus sp. WH 7805 n.d. WH7805_05251, WH7805_09779, WH7805_07451 n.d. WH7805_05656, WH7805_12388, WH7805_13803 WH7805_06416
Synechococcus sp. WH 5701 n.d. WH5701_14691, WH5701_01185 n.d. WH5701_07406, WH5701_15376 WH5701_06196
Synechococcus sp. RS 9917 n.d. RS_01761, RS_10896, RS_03633 n.d. RS9917_02041, RS9917_05240 RS9917_02641
Crocosphaera watsonii WH 8501 CwatDRAFT_0830 CwatDRAFT_4406, CwatDRAFT_6596 n.d. CwatDRAFT_5161 CwatDRAFT_0865, CwatDRAFT_0842, CwatDRAFT_0969
Trichodesmium erythraeum IMS 101 TeryDRAFT_2282 TeryDRAFT_0921, TeryDRAFT_1912 n.d. TeryDRAFT_3251 TeryDRAFT_2672 TeryDRAFT_3296, TeryDRAFT_3923
Freshwater species
Synechococcus elongatus sp. PCC 6301 n.d. Syc1592_c, Syc0859_c n.d. Syc0599_c, Syc1466_c Syc1030_d
Synechococcus elongatus sp. PCC 7942 n.d. Syncc7942_2514, Syncc7942_0670 n.d. Synpcc7942_0943, Synpcc7942_0031 Synpcc7942_0489
Synechococcus Yellowstone sp. JA-3-3-AB n.d. CYA_2817, CYA_1730 n.d. CYA_1537, CYA_0689 CYA_0364
Synechococcus Yellowstone sp. JA-2-3Ba (2-13) CYB_0250 CYB_0821, CYB_1917 n.d. CYB_1419, CYB_2128 CYB_0516, CYB_0715, CYB_1893
Thermosynechococcus elongatus BP-1 Tll0507 Tll1106, Tll1558 n.d. Tlr1328, Tlr0408, Tll1935 Tlr0416, Tlr0221
Synechocystis sp. PCC 6803 Sll1336 Sll0902, Slr1476 Sll0573 Slr1022 Sll1561, Slr0370, Slr0091
Gloeobacter violaceus PCC 7421 Glr1758 Gll3101, Gll2875 n.d. Glr0547, Glr3849, Gll2223 Glr2755, Glr3848, Gll1504, Gll2805
Nostoc sp. PCC 7120 Alr4495 Alr4907, All1681 n.d. Alr2398, Alr1080, All0396 Alr0540, Alr3771, All3556, All5022
Nostoc punctiforme PCC 73102 Npun02001803 Npun_02004258, Npun_02007755 n.d. Npun02005728, Npun02001164, Npun02001509 Npun02003702, Npun02006572, Npun02002895, Npun02002692
Anabaena variabilis ATCC 29413 Ava_2273 Ava_2197, Ava_1174 n.d. Ava_0214, Ava_3730, Ava_2839 Ava_2942, Ava_1554, Ava_3534, Ava_2258
  1. N.d. = not detected.