Comparison of Genomes of Three Xanthomonas oryzae Bacteriophages

Lee, Chia-Ni; Hu, Rouh-Mei; Chow, Teh-Yuan; Lin, Juey-Wen; Chen, Hui-Yi; Tseng, Yi-Hsiung; Weng, Shu-Fen

doi:10.1186/1471-2164-8-442

BMC Genomics

Table 1 Comparison of proteins deduced from the genes of X. oryzae phages Xop411, Xp10, and OP1.

From: Comparison of Genomes of Three Xanthomonas oryzae Bacteriophages

Xop411		Xp10		OP1		Xop411 with Xp10	Xop411 with OP1	Xp10 with OP1
Gene	Length (aa)	Gene	Length (aa)	Gene	Length (aa)	id (%)/aligned aa	id (%)/aligned aa	id (%)/aligned aa
p01	72	p01	72	ORF1	72	98/72	88/72	88/72
p02	101	p02	101	ORF2	101	90/101	81/80	75/79
		p03	154			61/134 (p17)^a		65/134 (ORF31)^b
						64/130 (p31.1)^a		55/134 (ORF58)^b
						61/134 (p42.1)^a
						63/142 (p55.1)^a
		p04	64			100/64 (p06)^a		69/56 (ORF4)^b
		p05	67	ORF3	65	-	-	65/49 (ORF3)^b
								51/35 (ORF58)^b
p06	569	p06	561	ORF4	561	93/561	84/561	83/561
p07	432	p07	432	ORF5	432	99/432	98/432	98/432
p08	245	p08	245	ORF6	245	76/245	97/245	77/245
p09	390	p09	390	ORF7	390	98/390	97/390	98/390
p10	115	p10	115	ORF8	115	95/115	92/115	90/115
p11	124	p11	124	ORF9	125	96/124	96/123	98/123
p12	119	p12	119	ORF10	157	98/119	90/118	88/118
p13	118	p13	118	ORF11	118	96/118	91/118	94/118
p14	210	p14	210	ORF12	210	94/210	96/210	97/210
p15	100	p15	100	ORF13	100	95/100	88/100	89/100
p16	100	p16	100	ORF14	68	97/100	83/68	85/68
				ORF15	76		-	-
				ORF16	510		-	-
p17	169	p17	172			66/171 (p17)^c	62/163 (ORF31)^b	64/164 (ORF31)^b
						65/164 (p50)^c	51/168 (ORF58)^b	57/169 (ORF58)^b
						61/166 (p58)^c
						61/134 (p03)^c
p18	998	p18	998	ORF17	999	94/998	90/999	91/999
p19	118	p19	118	ORF18	117	98/118	96/117	94/117
p20	152	p20	152	ORF19	152	98/152	97/152	99/152
p21	130	p21	146	ORF20	146	99/130	95/130	95/146
p22	1573	p22	1574	ORF21	1571	97/1574	96/1573	96/1574
p23	96	p23	96	ORF22	100	66/96	97/96	67/96
p24	231	p24	230	ORF23	231	61/231	93/231	63/231
p25	123	p25	122	ORF24	123	97/109	96/109	95/109
p26	453	p26	498	ORF25	431	79/499	88/453	72/499
p27	69	p27	74	ORF26	69	100/62	97/69	96/62
p27.1	98	p28	223	ORF26.1^d	98	93/43	96/98	96/31
p28	178	p28	223	ORF27	166	92/177	94/167	93/166
p29	111	p29	99	ORF28	111	81/77	90/111	81/79
p30	58	p30	63	ORF29	58	67/53	81/58	59/42
p31	293	p31	332	ORF30	288	71/289	77/289	80/289
p31.1	160			ORF31	167	71/157 (p50)^c	68/158 (ORF31)^b	69/163 (p50)^c
						67/157 (p58)^c	56/157 (ORF58)^b	69/166 (p58)^c
						65/155 (p17)^c		64/164 (p17)^c
						63/124 (p03)^c		65/134 (p03)^c
				ORF32	91		-	-
p32	746	p32	746	ORF33	774	91/746	89/746	87/746
p33	255	p33	255	ORF34	188	94/255	74/189	75/189
p34	86	p34	172	ORF35	86	98/72	97/72	96/82
p35	245	p35	245	ORF36	279	100/245	97/270	97/245
p36	134	p36	135	ORF37	135	99/116	97/116	96/116
p37	309	p37	309	ORF38	309	97/309	94/309	94/309
p38	266	p38	201	ORF39	288	98/188	93/265	91/188
p39	793	p39	794	ORF40	793	98/794	95/792	95/792
		p40	139			100/112 (p41)^a		97/113 (ORF41)^b
p41	374	p41	261	ORF41	438	98/260	94/372	92/260
						100/112 (p40)^c		97/113 (p40)^c
p42	280	p42	280	ORF42	282	82/280	85/280	85/280
p42.1	167					68/165 (p17)^c	65/163 (ORF31)^b
						65/164 (p58)^c	58/164 (ORF58)^b
						66/163 (p50)^c
						61/134 (p03)^c
p43	53	p43	50	ORF43	81	81/49	-	-
p44	222	p44	222	ORF44	255	89/222	78/222	81/222
p45	105	p45	104	ORF45	105	76/102	83/105	79/102
p46	73	p46	73	ORF46	73	71/73	72/73	84/73
		p47	67	ORF47	90	-	-	67/67
p48	134	p48	138	ORF48	108	71/134	53/107	70/108
p49	179	p49	151	ORF49	161	80/150	59/159	63/151
		p50	174	ORF50	52	65/164 (p17)^a	-	-
						70/162 (p31.1)^a		69/163 (ORF31)^b
						66/163 (p42.1)^a		53/163 (ORF58)^b
						66/168 (p55.1)^a
p51	141	p51	144	ORF51	142	80/140	86/141	74/140
p52	50	p52	50	ORF52	72	86/50	-	-
p53	63	p53	78	ORF53	62	67/64 (p53)^c	74/58 (ORF53)^b	75/44 (p53)^c
						43/55 (p17)^c	42/42 (ORF31)^b	50/36 (p58)^c
						53/26 (p58)^c	50/22 (ORF50)^b	52/36 (p50)^c
						44/43 (p50)^c		45/37 (p17)^c
p54	111	p54	111	ORF54	120	87/111	80/110	70/110
p55	56	p55	55	ORF55	35	67/55	62/37	88/35
p55.1	189					66/168 (p50)^c	64/162 (ORF31)^b
						66/163 (p58)^c	55/163 (ORF58)^b
						65/169 (p17)^c
						63/142 (p03)^c
p56	65	p56	75	ORF56	79	67/64	51/64	56/73
p57	114	p57	64	ORF57	132	-	65/102	-
p57.1	277					38/104 (p17)^c	35/138 (ORF31)^b
						39/104 (p03)^c	32/103 (ORF58)^b
						31/173 (p50)^c
						37/103 (p58)^c
p58	174	p58	167	ORF58	172	37/114 (p17)^c	34/116 (ORF31)^b	57/169 (p17)^c
						35/122 (p50)^c	35/110 (ORF58)^b	56/167 (p58)^c
						36/98 (p58)^c		53/163 (p50)^c
						35/98 (p03)^c		55/134 (p03)^c
		p59	124			-	-	-
p60	119	p60	119	ORF59	131	71/114	69/119	73/119

^{a, b,}and ^cindicate sequence comparison with a protein from Xop411, OP1, and Xp10 itself, respectively. ^d, predicted ORF in this study. Symbol -, no similarity was found.

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ISSN: 1471-2164

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