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Table 2 Microarrays results

From: The plasticizer butyl benzyl phthalate induces genomic changes in rat mammary gland after neonatal/prepubertal exposure

Gene name

Symbol

Fold change BBP/Control

Gene ID

21 days

   

   Up-regulated genes

   

Morphogenesis, organogenesis and cell differentiation

   

Cadherin 1

Cdh1

2.21

NM_031334

Cadherin EGF LAG seven-pass G-type receptor 3

Celsr3

2.16

NM_031320

Cardiotrophin 1

Ctf1

1.98

NM_017129

Early growth response 2

Egr2

2.03

NM_053633

Endothelial cell-specific molecule 1

Esm1

1.91

NM_022604

Forkhead box G1

Foxg1

2.21

NM_012560

Gamma-aminobutyric acid (GABA) B receptor 1

Gabbr1

2.14

AA817879

Glutamate receptor, metabotropic 5

Grm5

2.52

NM_017012

Glypican 2 (cerebroglycan)

Gpc2

1.83

NM_138511

NAD(P)H dehydrogenase, quinone 2

Nqo2

1.94

AW918463

Odd Oz/ten-m homolog 2 (Drosophila)

Odz2

2.15

NM_020088

Parathyroid hormone-like peptide

Pthlh

2.03

NM_012636

Pregnancy-induced growth inhibitor

Okl38

2.29

NM_138504

RAS-like family 11 member B

Rasl11b

1.96

BQ202027

Tenascin R

Tnr

1.93

NM_013045

Wilms tumor 1

Wt1

2.77

NM_031534

Other transcription factors

   

CUG triplet repeat, RNA-binding protein 2

Cugbp2

2.00

BE112513

Forkhead box A1 (Hnf3a)

Foxa1

2.24

NM_012742

HNF-3/forkhead homolog-1 (Hfh1)

Hfh1

2.08

NM_022858

Jun dimerization protein 2

Jundp2

2.05

NM_053894

Nuclear transcription factor-Y gamma

Nfyc

2.26

NM_012866

TEA domain family member 2

Tead2

1.87

AI043589

Transcription elongation factor A (SII), 2

Tcea2

1.99

NM_057098

Transcription factor 2

Tcf2

2.04

NM_013103

Transcription factor 4

Tcf4

2.13

BF398507

Cell proliferation

   

Alpha-2-glycoprotein 1, zinc

Azgp1

2.08

NM_012826

Calcium/calmodulin-dependent protein kinase II beta subunit

Camk2b

1.83

NM_021739

Chemokine (C-X-C motif) ligand 10

Cxcl10

1.84

NM_139089

Insulin receptor substrate 2

Irs2

2.28

CB547418

Neutrophil cytosolic factor 1

Ncf1

2.64

NM_053734

Platelet-derived growth factor, C polypeptide

Pdgfc

1.94

NM_031317

Upregulated by 1,25-dihydroxyvitamin D-3

Txnip

2.58

CB548021

Response to stress

   

Aryl hydrocarbon receptor

Ahr

1.95

NM_013149

Chemokine (C-C motif) ligand 5

Ccl5

2.05

NM_031116

Fc receptor, IgE, low affinity II, alpha polypeptide

Fcer2a

1.94

NM_133550

Heat shock 27 kD protein family, member 7

Hspb7

2.20

CB606395

Heat shock factor 2

Hsf2

2.43

NM_031694

Myeloid cell leukemia sequence 1

Mcl1

1.84

BF553322

Nitric oxide synthase 2, inducible

Nos2

1.83

NM_012611

Oxidized low density lipoprotein (lectin-like) receptor 1

Oldlr1

2.09

NM_133306

Peptidoglycan recognition protein 1

Pglyrp1

1.99

NM_053373

Thioredoxin reductase 1

Txnrd1

2.24

NM_031614

Signal transduction

   

5-hydroxytryptamine (serotonin) receptor 2A

Htr2a

1.96

NM_017254

Activin receptor interacting protein 1

Acvrip1

2.24

NM_053621

Agouti

A

2.18

NM_052979

Angiotensin receptor-like 1

Agtrl1

2.06

NM_031349

Growth factor receptor bound protein 2-associated protein 2

Gab2

1.92

NM_053417

Growth hormone releasing hormone

Ghrh

1.98

NM_031577

Guanylate cyclase 1, soluble, beta 2

Gucy1b2

1.91

NM_012770

MAS-related G-protein coupled receptor, member G

Mrgprg

2.80

CB545776

Mcf.2 transforming sequence-like

Mcf2l

2.24

NM_053951

Membrane-spanning 4-domains, subfamily A, member 2

Ms4a2

1.88

NM_012845

Protein kinase, cAMP-dependent, regulatory, type 2, alpha

Prkar2a

2.01

AW919085

Rho guanine nucleotide exchange factor (GEF) 1

Arhgef1

2.09

NM_021694

Rho guanine nucleotide exchange factor 7

Arhgef7

1.88

CA512056

Cell-cell signaling

   

4-aminobutyrate aminotransferase

Abat

1.85

BF393840

Discs, large (Drosophila) homolog-associated protein 2

Dlgap2

2.38

NM_053901

Gap junction membrane channel protein beta 5

Gjb5

1.89

NM_019241

Metabolism

   

11-beta-hydroxysteroid dehydrogenase

11-HSDIB

1.93

M77835.1

Acetyl-coenzyme A carboxylase alpha

Acaca

2.09

NM_022193

Aldehyde oxidase 1

Aox1

2.39

NM_019363

Alpha 1,2-fucosyltransferase C gene

Ftc

1.98

NM_020541

Apolipoprotein A-I

Apoa1

2.50

NM_012738

Cholinergic receptor, muscarinic 3

Chrm3

2.08

NM_012527

Diazepam binding inhibitor-like 5

Dbil5

1.84

NM_021596

Elastase 2

Ela2

2.03

NM_012553

Fatty acid binding protein 3

Fabp3

2.14

NM_024162

FK506 binding protein 1b

Fkbp1b

2.01

NM_022675

Glucosidase, alpha; acid (glycogen storage disease type II)

Gaa

2.30

CB544857

Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1

Hsd3b1

1.94

AI060276

NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5

Ndufa5

2.03

BQ210630

Nicotinamide nucleotide transhydrogenase

Nnt

1.95

CB544867

Peptide/histidine transporter PHT2

Slc15a3

1.92

NM_139341

Phosphate cytidylyltransferase 1, choline, alpha isoform

Pcyt1a

2.49

NM_078622

Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1

Plod1

2.43

AA944202

Proteasome (prosome, macropain) 26S subunit, ATPase 3

Psmc3

1.90

NM_031595

Protein kinase C, gamma

Prkcc

2.04

NM_012628

Serine/threonine kinase 2

Slk

1.89

AA955942

Small glutamine rich protein with tetratricopeptide repeats 2

Sgtb

2.03

CB545680

Succinate-semialdehyde dehydrogenase

 

1.93

L34821.1

Transmembrane protease, serine 8 (intestinal)

Tmprss8

1.88

CB544856

Valosin-containing protein

Vcp

2.44

CB546610

Transport

   

Adducin 1 (alpha)

Add1

2.65

NM_016990

Apolipoprotein A-V

Apoa5

2.00

NM_080576

Cholinergic receptor, nicotinic, alpha polypept. 1

Chrna1

1.88

NM_024485

CUB and zona pellucida-like domains 1

Cuzd1

2.25

NM_054005

Epidermal growth factor

Egf

2.05

NM_012842

Gamma-aminobutyric acid A receptor, gamma 2

Gabrg2

1.87

AW523484

Glutamate receptor, ionotropic, kainate 4

Grik4

2.00

NM_012572

Glutamate receptor, ionotropic, NMDA2D

Grin2d

1.91

NM_022797

Olfactory receptor 226

Olfr41

1.90

NM_031710

Potassium inwardly-rectifying channel, subfamily J, member 6

Kcnj6

1.84

NM_013192

RAB10, member RAS oncogene family

Rab10

2.33

CB547865

Rabaptin, RAB GTPase binding effector protein 2

Rabep2

2.07

NM_058213

Sodium channel, voltage-gated, type II, beta polypeptide

Scn2b

2.01

NM_012877

Solute carrier family 12, member 4

Slc12a4

2.38

BI295055

Solute carrier family 13, member 1

Slc13a1

1.89

AA818620

Synaptotagmin 8

Syt8

2.48

NM_053325

Cell organization

   

Adaptor-related protein complex 3, mu 2 subunit

Ap3m2

2.00

NM_133305

ATP-dependent, RNA helicase

Ddx52

1.84

NM_053525

Bassoon

Bsn

1.94

NM_019146

Cadherin-8

Cdh8

2.42

AB010436.1

Integrin alpha 5

Itga5

1.94

CB546515

Myoglobin

Mb

2.13

AA964911

Synaptotagmin 1

Syt1

2.14

AW141251

Trans-golgi network protein 1

Tgoln2

1.93

NM_138840

Other

   

Alpha-1-B glycoprotein

A1bg

1.84

NM_022258

Aortic preferentially expressed gene 1

Apeg1

2.53

CB547339

Arfaptin 1

LOC60382

2.00

NM_021763

CDC91 cell division cycle 91-like 1 (S.cerevisiae)

Cdc91l1

2.57

BQ193826

Delta-like 1 homolog (Drosophila)

Dlk1

2.30

NM_053744

Glycoprotein, synaptic 2

Gpsn2

1.87

 

Guanylate cyclase activator 2A

Guca2a

2.43

NM_013118

Heparan sulfate proteoglycan, perlecan domain I

Cd44

2.20

U56859.1

Heat-responsive protein 12

Hrsp12

1.92

NM_031714

Insulin-like 6

Insl6

1.95

NM_022583

Kinesin-related protein KRP5

KRP5

1.99

AF035954.1

Luteinizing hormone beta

Lhb

1.99

U25802

Ly6-C antigen

Ly6c

2.02

NM_020103

Mitochondrial capsule selenoprotein

Mcsp

2.46

NM_031536

Neural visinin-like Ca2+-binding protein type 2

Nvjp2

1.95

NM_017357

NIMA related kinase 2

Nek2

1.86

AF352021.1

Nuclear GTPase PIKE

PIKE

1.84

NM_023026

Nucleoporin 98

Nup98

2.18

NM_031074

Oxytocin receptor

Oxtr

2.11

AF380129.1

Olfactory-specific cytochrome P-450

P-450olf1

2.03

M33296.1

Potassium channel tetramerisation domain containing 13

Kctd13

2.33

AI045333

Proline-rich protein 15

Prp15

2.24

NM_012632

RAB8A, member RAS oncogene family

Mel

2.12

BC087584

Regucalcin gene promotor region related protein

Rgpr

2.05

AB060653

Ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)

Rnasel

2.05

CB546885

Ring finger protein 38

Oip1

1.85

NM_134467

Serine protease inhibitor

Spin2b

2.67

NM_012657

Signal recognition particle 54 kDa

Srp54

1.97

BC079117

Sodium-cotransporter rkST1

rkST1

1.95

U47673.1

Synaptosomal-associated protein, 91 kDa homolog (mouse)

Snap91

2.23

NM_031728

Telomerase catalytic subunit

 

2.61

AF247818.1

Titin

Ttn

1.88

AF059344.1

Ubiquitin specific protease 11

Usp11

2.51

CB546595

Zinc finger protein 14 (DZF14)

DZF14

1.87

U78142.1

Zinc finger, DHHC domain containing 7

Zdhhc7

1.83

AY040615

   Down-regulated genes

   

Glutamate decarboxylase 1

Gad1

-3.65

NM_017007

35 days

   

Glutamate decarboxylase 1

Gad1

-2.69

NM_017007

50 days

   

   Up-regulated genes

   

Carboxylesterase 1

Ces1

1.79

NM_031565

Carboxypeptidase A1 (pancreatic)

Cpa1

1.74

NM_016998

Corticotropin releasing hormone 1

Crhr1

1.79

NM_030999

Ectonucleotide pyrophosphatase/phosphodiesterase 5

Enpp5

2.00

CB544850

Glucagon receptor, transcript variant 2

Gcgr

1.74

NM_172091

Glycoprotein 2 (zymogen granule membrane)

Gp2

1.80

NM_134418

Malic enzyme 1

Me1

1.74

NM_012600

Nuclear receptor subfamily 4, group A, member 1

Nr4a1

2.06

NM_024388

Transcription elongation factor A2

Tcea2

1.75

NM_057098

Tryptophan hydroxylase

Tph

1.93

X53501.1

   Down-regulated genes

   

Actinin alpha 3

Actn3

-2.76

NM_133424

Creatine kinase, muscle form

Ckm

-3.64

NM_012530

Glutamate decarboxylase 1

Gad1

-2.69

NM_017007

Myosin, light polypeptide 2

Myl2

-4.90

NM_012605

Parvalbumin (calcium binding protein)

Pvalb

-2.38

NM_022499

Titin

Ttn

-2.51

AF059344.1

Troponin I, skeletal, fast 2

Tnni2

-2.46

NM_017185

Troponin-c

Tnnc2

-4.77

AI639532

100 days

   

Translin

Tsn

2.40

NM_021762

Whey acidic protein

Wap

2.87

NM_053751

  1. List of known genes down- and up-regulated in mammary glands of BBP treated rats at 21, 35, 50 and 100 days. Average fold change related to control mammary glands is indicated. Up-regulated genes at 21 days have been sorted by function according to level 4 of Gene Ontology.