Figure 3
From: Positional bias of general and tissue-specific regulatory motifs in mouse gene promoters
Promoter motif profiles in mouse genes with different expression width. ALL: complete promoter dataset; HK: housekeeping genes; RT: genes with restricted expression. Profiles were obtained with the program PEAKS using window size 31. Profiles with no significant sequence ranges (NA) did not accomplish p-value <= 10-5. Left-most cells contain the TRANSFAC matrix (or JASPAR for TBP) used for motif prediction and the significant regions in the different datasets. Background color indicates score value grading, from intense red (highest) to pale yellow (lowest). 'score' is the positional footprinting score; '%seq' percentage of sequences at maximum peak; 'pos.', position of the maximum peak; 'ranges' sequence interval significant above the p-value cut-off.