Skip to main content

Table 1 Comparative features of the chromosome 1 strand switch region and the 5'-ends of the adjacent XPP and PAXP genes in 15 Leishmania species a.

From: Compared genomics of the strand switch region of Leishmania chromosome 1 reveal a novel genus-specific gene and conserved structural features and sequence motifs

Species

XPP

Switch region

PAXP

 

% nt div. b

div. aa/32aa c

Size (bp)

% AT

% nt div d

% nt div. e

div. aa/36aa f

L. aethiopica

1

1

1640

51

15

1

0

L. arabica

1

0

1658

50

16

4

1

L. turanica

2

1

1665

50

22

2

0

L. major

3

0

1666

50

16

5

1

L. tropica

2

0

1659

50

14

2

1

L. archibaldi

1

0

1668

51

16

3

1

L. donovani

1

0

1666

50

14

2

1

L. infantum

1

0

1662

50

15

3

1

L. amazonensis

3

0

1669

52

16

2

0

Sauroleishmania

9

3

1643

54

25

4

0

L. peruviania

3

1

1656

53

23

13

4

L. braziliensis

3

1

1657

53

24

10

3

L. guyanensis

3

1

1652

53

23

11

3

L. sp. MAR1

12

4

1658

51

30

12

0

L. enriettii

6

1

1642

50

25

8

0

  1. a For each species, the divergent nucleotides or amino acids were counted as compared with the consensus sequence; b Percentage of nucleotide (nt) divergence established from the sequence of 97 nt at the 5' end of the gene; all percentages were rounded up to the closest integer number; c Number of unconserved amino acids (aa) out of 32 aa at the N-terminal end of the protein; d Percentage of nucleotide (nt) divergence established from the consensus sequence over the whole SSR as defined in the Material and Methods; e Percentage of nucleotide (nt) divergence established from the sequence of 109 nt at the 5' end of the gene; f Number of unconserved amino acids (aa) out of 36 aa at the N-terminal end of the protein.