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Table 3 Classification of Actinomycetales yrbE and mce genes a

From: A phylogenomic analysis of the Actinomycetales mce operons

Prefixb yrbE1A yrbE1B mce1A mce1B mce1C mce1D mce1E mce1F
Rv 0167 0168 0169 0170 0171 0172 0173 0174
MT 0176 0177rc 0178 0179 0180 0181 0182 0183
Mb 0173 0174 0175 0176 0177 0178 0179 0180
ML 2587 2588 2589 2590 2591 2592 2593 2594
MAP 3602 3603 3604 3605 3606 3607 3608 3609
MSMEG 0126 0127 0128 0129 0130 0131 0132 0133
  yrbE2A yrbE2B mce2A mce2B mce2C mce2D mce2E mce2F
Rv 0587 0588 0589 0590 0591 0592 0593 0594
MT 0616 0617 0618 0619 0621 0622 0623 0624
Mb 0602 0603 0604 0605 0606 0607 0609 0610
MAP 4082 4083 4084 4085 4086 4087 4088 4089
  yrbE3A yrbE3B mce3A mce3B mce3C mce3D mce3E mce3F
Rv 1964 1965 1966 1967 1968 1969 1970 1971
MT 2016 2017 2018 2019 2020 2021 2022 2023
Mb 1999        
MAP 2117c 2117c.1d 2116c 2115c 2114c 2113c 2112c 2111c
MSMEG 0335 0336e 0337 0338 0339 0340 0341 0342
  yrbE4A yrbE4B mce4A mce4B mce4C mce4D mce4E mce4F
Rv 3451c 3450c 3499c 3498c 3497c 3496c 3495c 3494c
MT 3605 3604 3603 3602 3601 3600 3599 3598
Mb 3531c 3530c 3529c 3528c 3527c 3526c 3525c 3524c
MAP 0562 0563 0564 0565 0566 0567 0568 0569
MSMEG 5861 5860 5859.3e 5859.2e 5859.1e 5859 5858 5857.1e
nfa 5350 5360 5370 5380 5390 5400 5410 5420
  yrbE5A yrbE5B mce5A mce5B mce5C mce5D mce5E mce5F
MAP f 0757 0758 0759 0760 0761 0762/3g 0764 0765
MAP    2189 2190 2191 2192 2193h 2194
MSMEG 2855 2856 2857 2858 2859 2860 2861 2862
MSMEG f 4785 4784 4783 4782 mei 4777 4776 4775
  yrbE6A yrbE6B mce6A mce6B mce6C mce6D mce6E mce6F
nfa 51090 51080 51070 51060 51050 51040 51030 51020
SCO 5901 5900 5899 5898 5897 5896 5895 5894
SAV 2421 2420 2419 2418 2417 2416 2415 2514
  yrbE7A yrbE7B mce7A mce7B mce7C mce7D mce7E mce7F
MAP j mei 0107 0108 0109 0110 0111 0112 0113
MAP 1849 1850 1851 1852 1853 1854 1855 1856
MSMEG j 1131 1132 1133 1134 1135 1136 1137 1138
nfa 50540 50530 50520 50510 50500 50490 50480 50470
nfa 56330 56320 56310 56300 56290 56280 56270 56260
  yrbE8A yrbE8B mce8A mce8B mce8C mce8D mce8E mce8F
nfa 11130 11140 11150 11160 11170 11180 11190 11200
nfa 29780 29770 29760h 29750 29740 29730 29720 29710
  1. a Operons mce1-4 designated as in TubercuList; mce5-8 designated herein. Gene names in organisms other than M. tuberculosis do not correspond to those given in genome annotation.
  2. b Organism specific gene number prefix: Rv, M. tuberculosis H37Rv; MT, M. tuberculosis CDC1551; Mb, M. bovis; ML, M. leprae; MAP, M. paratuberculosis; MSMEG, M. smegmatis; nfa, N. farcinica; SCO, S. coelicolor; SAV, S. avermitilis.
  3. c Orthologous sequence present, but ORF annotated in reverse direction.
  4. d Orthologous sequence present, but not annotated. ORF extends ~400 bp at 5'end.
  5. e Orthologous sequence present, but not annotated.
  6. f Orthology inferred from synteny.
  7. g Contains frameshift mutation, resulting in two ORFs.
  8. h Not a member of IPR003399 or IPR005693.
  9. i Insertion of mobile element.
  10. j Orthology inferred from synteny.