Allelotyping of pooled DNA with 250 K SNP microarrays

BMC Genomics

Table 1 Comparison of accuracies of three algorithms

method_source*	mean error	median error	correlation	mean SD
Simpson_our	0.046	0.034	0.951	0.051
Simpson_web	0.051	0.038	0.941	0.056
Craig_our	0.067	0.049	0.909	0.072
Craig_web	0.080	0.061	0.903	0.075
PPC_our	0.043	0.033	0.959	0.022
PPC_brohede	0.050	0.038	0.946	0.022

The errors are based on estimates from 3574 SNPs which could be analyzed by all methods.
*Data used for normalization: "our" = 34 individuals analyzed in our lab, "Brohede" = 26 individuals analyzed in the lab of Brohede et al. [1], "web" >3000 individuals analyzed in the lab of Caig et al. [9], files are available under [15].

ISSN: 1471-2164