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Table 1 Comparison of accuracies of three algorithms

From: Allelotyping of pooled DNA with 250 K SNP microarrays

method_source* mean error median error correlation mean SD
Simpson_our 0.046 0.034 0.951 0.051
Simpson_web 0.051 0.038 0.941 0.056
Craig_our 0.067 0.049 0.909 0.072
Craig_web 0.080 0.061 0.903 0.075
PPC_our 0.043 0.033 0.959 0.022
PPC_brohede 0.050 0.038 0.946 0.022
  1. The errors are based on estimates from 3574 SNPs which could be analyzed by all methods.
  2. *Data used for normalization: "our" = 34 individuals analyzed in our lab, "Brohede" = 26 individuals analyzed in the lab of Brohede et al. [1], "web" >3000 individuals analyzed in the lab of Caig et al. [9], files are available under [15].