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Table 1 Molecular characteristics of actins (act), actin-related proteins (ARP), and actin-like protein (ALP) in P. tetraurelia

From: The actin multigene family of Paramecium tetraurelia

    DNA Protein
Gene/subfamily Accession number Scaffold numberd Length[bp] ORF[bp] Introns[number] Identitya[%] Length [aa] Size [kDa] Identitya[%] Identitya,b[%]
actin1           
   act1-1c AJ537442 13 1183 1128 2 100 375 41.7 100 100
   act1-2c AJ537443 20 1182 1128 2 98.0 375 41.7 100 100
   act1-3c AJ537444 32 1184 1128 2 94.8 375 41.7 100 100
   act1-4c AJ537445 111 1179 1128 2 78.6 375 41.7 89.9 89.9
   act1-5 CR855974 85 1180 1128 2 80.5 375 41.6 91.5 91.5
   act1-6c CR548612 1 1128 1128 0 65.8 375 41.2 61.7 61.7
   act1-7c CR855973 8 1128 1128 0 71.5 375 41.7 76.9 76.9
   act1-8 CR855972 105 1168 1113 2 79.3 370 42.1 70.2 70.2
   act1-9c CR855988 41 1158 1131 1 75.2 376 43.3 63.3 63.3
   act1-10c,e CR855989 73 1200 1149 1 66.2 103 11.9 10.9 12.2
actin2           
   act2-1c AJ537446 40 1256 1131 5 100 376 42.4 100 59.6
   act 2-2 AJ537447 102 1257 1131 5 89.9 376 42.4 99.5 59.6
actin3           
   act 3-1c AJ537448 8 1113 1113 0 100 370 42.4 100 44.1
   act 3-2c CR548612 1 1113 1113 0 82.7 370 42.1 82.7 44.7
actin4           
   act 4-1c CR855971 147 1066 1038 1 100 345 38.5 100 28.2
   act 4-2 CR856039 128 1062 1038 1 90.8 345 38.5 96.8 28.5
actin 5(ARP1)           
   act 5-1c CR855970 156 1282 1131 6 100 376 42.8 100 39.6
   act 5-2 CR855969 20 1284 1131 6 93.5 376 42.8 100 39.6
   act 5-3 CR855968 13 1284 1131 6 80.3 376 42.9 86.7 39.1
actin6           
   act 6-1c CR855967 52 1296 1185 4 100 394 44.1 100 30.9
   act 6-2 CR855986 60 1294 1185 4 90.5 394 45.0 93.7 31.1
actin 7(ARP2/4)           
   act 7-1c CR855941 115 1217 1164 2 100 387 44.9 100 23.7
   act 7-2 CR855965 113 1217 1164 2 89.3 387 44.8 95.4 25.0
actin8           
   act 8-1c CR548612 1 1100 1056 2 100 351 40.6 100 37.0
actin9(ARP10)           
   act 9-1c CR855964 122 1026 999 1 100 332 38.0 100 17.6
ARP 2           
   ARP 2-1 CR855976 14 1314 1176 5 100 391 43.8 100 41.2
   ARP 2-2 CR855992 42 1309 1176 5 90.7 391 43.9 96.2 40.2
ARP 3           
   ARP 3-1 CR856038 62 1401 1278 5 100 426 48.9 100 36.2
   ARP 3-2 CR855990 24 1401 1278 5 92.6 426 48.9 98.6 36.2
ALP1(ARP 5)           
   ALP 1-1 CR855977 19 2002 1978 1 100 658 76.9 100 25.0
  1. a Sequences were aligned by Clustal W
  2. b Numbers are referred to the amino acid sequence of act1-1
  3. c Genes are analyzed also on the cDNA level
  4. d Paramecium genome project, series of cloned pieces of DNA representing overlapping regions of a particular chromosome, that are in the right order
  5. e Putative pseudogene