The actin multigene family of Paramecium tetraurelia

Sehring, Ivonne M; Mansfeld, Jörg; Reiner, Christoph; Wagner, Erika; Plattner, Helmut; Kissmehl, Roland

doi:10.1186/1471-2164-8-82

BMC Genomics

Table 1 Molecular characteristics of actins (act), actin-related proteins (ARP), and actin-like protein (ALP) in P. tetraurelia

From: The actin multigene family of Paramecium tetraurelia

			DNA				Protein
Gene/subfamily	Accession number	Scaffold number^d	Length[bp]	ORF[bp]	Introns[number]	Identity^a[%]	Length [aa]	Size [kDa]	Identity^a[%]	Identity^a,b[%]
actin1
act1-1^c	AJ537442	13	1183	1128	2	100	375	41.7	100	100
act1-2^c	AJ537443	20	1182	1128	2	98.0	375	41.7	100	100
act1-3^c	AJ537444	32	1184	1128	2	94.8	375	41.7	100	100
act1-4^c	AJ537445	111	1179	1128	2	78.6	375	41.7	89.9	89.9
act1-5	CR855974	85	1180	1128	2	80.5	375	41.6	91.5	91.5
act1-6^c	CR548612	1	1128	1128	0	65.8	375	41.2	61.7	61.7
act1-7^c	CR855973	8	1128	1128	0	71.5	375	41.7	76.9	76.9
act1-8	CR855972	105	1168	1113	2	79.3	370	42.1	70.2	70.2
act1-9^c	CR855988	41	1158	1131	1	75.2	376	43.3	63.3	63.3
act1-10^c,e	CR855989	73	1200	1149	1	66.2	103	11.9	10.9	12.2
actin2
act2-1^c	AJ537446	40	1256	1131	5	100	376	42.4	100	59.6
act 2-2	AJ537447	102	1257	1131	5	89.9	376	42.4	99.5	59.6
actin3
act 3-1^c	AJ537448	8	1113	1113	0	100	370	42.4	100	44.1
act 3-2^c	CR548612	1	1113	1113	0	82.7	370	42.1	82.7	44.7
actin4
act 4-1^c	CR855971	147	1066	1038	1	100	345	38.5	100	28.2
act 4-2	CR856039	128	1062	1038	1	90.8	345	38.5	96.8	28.5
actin 5(ARP1)
act 5-1^c	CR855970	156	1282	1131	6	100	376	42.8	100	39.6
act 5-2	CR855969	20	1284	1131	6	93.5	376	42.8	100	39.6
act 5-3	CR855968	13	1284	1131	6	80.3	376	42.9	86.7	39.1
actin6
act 6-1^c	CR855967	52	1296	1185	4	100	394	44.1	100	30.9
act 6-2	CR855986	60	1294	1185	4	90.5	394	45.0	93.7	31.1
actin 7(ARP2/4)
act 7-1^c	CR855941	115	1217	1164	2	100	387	44.9	100	23.7
act 7-2	CR855965	113	1217	1164	2	89.3	387	44.8	95.4	25.0
actin8
act 8-1^c	CR548612	1	1100	1056	2	100	351	40.6	100	37.0
actin9(ARP10)
act 9-1^c	CR855964	122	1026	999	1	100	332	38.0	100	17.6
ARP 2
ARP 2-1	CR855976	14	1314	1176	5	100	391	43.8	100	41.2
ARP 2-2	CR855992	42	1309	1176	5	90.7	391	43.9	96.2	40.2
ARP 3
ARP 3-1	CR856038	62	1401	1278	5	100	426	48.9	100	36.2
ARP 3-2	CR855990	24	1401	1278	5	92.6	426	48.9	98.6	36.2
ALP1(ARP 5)
ALP 1-1	CR855977	19	2002	1978	1	100	658	76.9	100	25.0

^a Sequences were aligned by Clustal W
^b Numbers are referred to the amino acid sequence of act1-1
^c Genes are analyzed also on the cDNA level
^d Paramecium genome project, series of cloned pieces of DNA representing overlapping regions of a particular chromosome, that are in the right order
^e Putative pseudogene

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ISSN: 1471-2164

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