From: Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Probe set ID | Putative Function | Rice Chr. | 5' Rice Gene | Expression & Criteria | q-value % | fold change |
---|---|---|---|---|---|---|
Root Comparison | Â | Â | Â | Â | Â | Â |
   Contig8052_at | splicing factor PWI domain protein | 3 | 29429795 | MT up; R | 25 | 2.0 |
   Contig3842_at | LEA protein | 5 | 28987287 | MT up; RSM | 25 | 34.3 |
   Contig6165_at | CCT motif protein | 5 | 29573293 | MT up; RSM | 25 | 9.9 |
   Contig15475_at | reticuline oxidase precursor | 6 | 20743699 | MT up; R | 25 | 6.1 |
   Contig23396_at | expressed protein | - | - | MT up; RM | 25 | 2.6 |
   Contig6845_at | no hit | - | - | GP up; RS | 25 | 2.9 |
   Contig2510_at | expressed protein | - | - | GP up; R | 25 | 1.8 |
   Contig25937_at | structural maintenance of chr (SMC) | - | - | GP up; R | 25 | 1.7 |
   Contig17352_at | expressed protein | - | - | GP up; R | 25 | 1.7 |
   HVSMEn0005L15f | expressed protein | - | - | GP up; R | 25 | 1.7 |
   Contig18699_at | zinc finger (C3HC4-type RING finger) | 1 | 39965630 | GP up; R | 25 | 1.8 |
   Contig7273_s_at | replication protein A2 | 2 | 25402499 | GP up; R | 25 | 5.0 |
   Contig25428_at | RPA 32 kDa | 2 | 25402499 | GP up; RM | 25 | 2.6 |
   Contig24975_at | expressed protein | 4 | 10975293 | GP up; R | 25 | 1.7 |
   Contig10006_at | AAA-type ATPase family protein | 5 | 29015582 | GP up; R | 25 | 2.2 |
Shoot Comparison | Â | Â | Â | Â | Â | Â |
   Contig3842_at | LEA protein | 5 | 28987287 | MT up; SRYM | 10 | 14.4 |
   Contig6165_at | CCT motif protein | 5 | 29573293 | MT up; SRYM | 10 | 5.7 |
   EBro08_SQ004_F05 | expressed protein | 3 | 2102803 | MT up; SY | 10 | 2.8 |
   HV_CEb0003E19r2 | Auxin response factor 2 | 1 | 41022513 | MT up; SM | 10 | 2.0 |
   Contig6845_at | no hit | - | - | GP up; SRM | 10 | 10.7 |
   S0000800234C01F1 | expressed protein | 7 | 5429853 | GP up; SYM | 10 | 3.3 |
   HX01D24w_at | expressed protein | 7 | 5429853 | GP up; SYM | 10 | 1.5 |
   Contig1846_s_at | Catalase1 | 3 | 1769149 | GP up; SY | 10 | 3.4 |
   Contig11254_at | floral homeotic protein (HUA1) | 1 | 24805279 | GP up; SY | 10 | 3.4 |