BMC Genomics

Table 4 Proportion of the MCAT qRT-PCR assayed genes selected by method.

From: Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays

	YMCAT vs YWT			OMCAT vs OWT			OWT vs YWT
Method	Top 100	Top 150	Top 200	Top 100	Top 150	Top 200	Top 100	Top 150	Top 200
ANOVA	0.277	0.362	0.489	0.085	0.106	0.106	0.128	0.128	0.128
Combined P	0.277	0.340	0.426	0.064	0.106	0.106	0.085	0.128	0.128
Cyber-T	0.213	0.255	0.362	0.064	0.106	0.149	0.149	0.149	0.149
Median t	0.255	0.362	0.426	0.043	0.064	0.085	0.106	0.128	0.128
Moderated t	0.085	0.106	0.128	0.021	0.043	0.043	0.128	0.128	0.128
Original t	0.021	0.043	0.064	0.000	0.000	0.000	0.064	0.085	0.106

This table shows the proportion of the 47 qRT-PCR assayed genes ranked in the top 100, 150 and 200 by each of the testing methods applied to the corresponding array data.

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ISSN: 1471-2164

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