Table 2 Genes differentially expressed in Affymetrix experiment. Bold text represents genes that were further studied using real time RT-PCR
From: Search for the genes involved in oocyte maturation and early embryo development in the hen
Affymetrix reference | Accession number | Gene name found by Blast search | Abbreviation of genes studied | Fold change | Comparison | Number of overexpressed genes |
|---|---|---|---|---|---|---|
Gga.305.1.S1_at | NM_204783.1 | Gallus gallus wingless-type MMTV integration site family, member 4 | Â | 150 | F1 GCs and Ov GDR | 56 genes overexpressed in Ov GDR |
GgaAffx.13126.1.S1_at | AJ721023 | Gallus gallus mRNA for hypothetical protein, clone 32l2 | Â | 129 | Â | Â |
Gga.5341.1.S1_at | BU365377 | Finished cDNA, clone ChEST746h6 | Â | 105 | Â | Â |
Gga.7980.1.S1_at | CD730241 | similar to Interferon regulatory factor 6 | Â | 102 | Â | Â |
Gga.4536.2.S1_a_at | BX934646.1 | aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase) | Â | 94 | Â | Â |
Gga.9136.2.S1_a_at | CD740066 | Gallus gallus tumor-associated calcium signal transducer 1 | Â | 92 | Â | Â |
GgaAffx.11525.1.S1_s_at | AJ719422 | Gallus gallus claudin 1 | Â | 91 | Â | Â |
GgaAffx.20379.1.S1_at | CR524236.1 | Finished cDNA, clone ChEST914o3 | Â | 90 | Â | Â |
Gga.9936.1.S1_at | BX936026.2 | Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7 | Â | 83 | Â | Â |
Gga.5597.1.S1_at | BU450115 | B-cell translocation gene 4 | btg4 | 52 | Â | Â |
Gga.14454.1.S1_at | NM_213576.1 | zona pellucida protein D | zpD | 890 | F1 GCs and Ov GDR | 392 genes overexpressed in F1 GCs |
Gga.12391.1.S1_at | BX935169.2 | Gallus gallus similar to adrenodoxin homolog | Â | 718 | Â | Â |
Gga.1824.1.S1_at | BU350625 | Gallus gallus finished cDNA, clone ChEST974b18 | Â | 703 | Â | Â |
Gga.6358.1.S1_at | BX265773 | Gallus gallus similar to chromosome 9 open reading frame 61 | Â | 687 | Â | Â |
Gga.596.1.S2_at | NM_205118.1 | Gallus gallus 3beta-hydroxysteroid dehydrogenase/delta5-delta4 isomerase | Â | 667 | Â | Â |
Gga.17706.1.S1_at | CR388473.1 | Gallus gallus finished cDNA, clone ChEST591g11 | Â | 579 | Â | Â |
Gga.3095.1.S1_a_at | BX932425.2 | similar to hypothetical protein FLJ22662 | Â | 561 | Â | Â |
Gga.13065.1.S1_at | BU424424 | Gallus gallus finished cDNA, clone ChEST537h21 | Â | 559 | Â | Â |
GgaAffx.5954.1.S1_at | ENSGALT00000015374.1 | Gallus gallus similar to LRTS841 | Â | 557 | Â | Â |
GgaAffx.24194.1.S1_at | ENSGALT00000021874.1 | Gallus gallus similar to CG8947-PA | Â | 534 | Â | Â |
Gga.305.1.S1_at | NM_204783.1 | Gallus gallus wingless-type MMTV integration site family, member 4 | Â | 90 | F1 GDR and F1 GCs | 238 genes overexpressed in F1 GDR |
Gga.7980.1.S1_at | CD730241 | similar to Interferon regulatory factor 6 | Â | 80 | Â | Â |
Gga.6103.1.S1_x_at | BU242707 | Gallus gallus similar to CG31613-PA | Â | 75 | Â | Â |
Gga.4901.1.S1_at | BU424477 | Gallus gallus similar to carbonic anhydrase 9 | Â | 72 | Â | Â |
Gga.9136.2.S1_a_at | CD740066 | Gallus gallus tumor-associated calcium signal transducer 1 | Â | 66 | Â | Â |
Gga.5133.1.S1_at | NM_204218.1 | Gallus gallus deleted in azoospermia-like | dazL | 34 | Â | Â |
Gga.5597.1.S1_at | BU450115 | B-cell translocation gene 4 | btg4 | 33 | Â | Â |
Gga.8089.1.S1_at | BU258896 | Gallus gallus similar to Kruppel-like transcription factor neptune | ktfn | 18 | Â | Â |
Gga.5714.1.S1_at | BX268842 | Gallus gallus similar to zona pellucida A | zpA | 12 | Â | Â |
GgaAffx.9819.1.S1_at | ENSGALT00000024851.1 | oocyte maturation factor Mos | chkmos | 10 | Â | Â |
Gga.9254.1.S1_at | CF384921 | Â | Â | 120 | F1 GDR And F1 GCs | 104 genes overexpressed in F1 GCs |
GgaAffx.96.1.S1_s_at | ENSGALT00000000192.1 | Gallus gallus similar to CG8947-PA | Â | 68 | Â | Â |
Gga.12454.1.S1_at | BU435007 | similar to relaxin 3 preproprotein | Â | 68 | Â | Â |
Gga.11031.1.S1_at | BU450054 | Gallus gallus finished cDNA, clone ChEST699k2 | Â | 56 | Â | Â |
GgaAffx.24194.1.S1_at | ENSGALT00000021874.1 | Gallus gallus similar to CG8947-PA | Â | 31 | Â | Â |
Gga.572.1.S1_at | NM_205078.1 | Gallus gallus nuclear receptor subfamily 5, group A, member 2 | Â | 27 | Â | Â |
Gga.10434.1.S1_at | BX933855.1 | Gallus gallus similar to chromosome 9 open reading frame 61 | Â | 19 | Â | Â |
Gga.4510.1.S1_a_at | NM_205261.1 | Gallus gallus finished cDNA, clone ChEST159o8 | Â | 17 | Â | Â |
Gga.7212.1.S1_at | BU124346 | Gallus gallus similar to Ephx1 protein | Â | 14 | Â | Â |
Gga.3667.1.S1_at | NM_204839.1 | Gallus gallus reversion-induced LIM protein | Â | 13 | Â | Â |
Gga.14454.1.S1_at | NM_213576.1 | Gallus gallus zona pellucida protein D | zpD | 602 | F1 GDR And Ov GDR | 92 genes overexpressed in F1 GDR |
Gga.12391.1.S1_at | BX935169.2 | similar to adrenodoxin homolog – chicken |  | 321 |  |  |
Gga.596.1.S2_at | NM_205118.1 | Gallus gallus 3beta-hydroxysteroid dehydrogenase delta5-delta4 isomerase | Â | 317 | Â | Â |
Gga.17706.1.S1_at | CR388473.1 | Finished cDNA, clone ChEST591g11 | Â | 307 | Â | Â |
GgaAffx.5954.1.S1_at | ENSGALT00000015374.1 | similar to LRTS841 | Â | 247 | Â | Â |
Gga.6358.1.S1_at | BX265773 | weak similarity to HUMAN Putative protein X123 | Â | 240 | Â | Â |
Gga.1824.1.S1_at | BU350625 | Finished cDNA, clone ChEST974b18 | Â | 213 | Â | Â |
Gga.13065.1.S1_at | BU424424 | Finished cDNA, clone ChEST738j4 | Â | 195 | Â | Â |
Gga.3095.1.S1_a_at | BX932425.2 | similar to hypothetical protein FLJ22662 | Â | 183 | Â | Â |
Gga.7210.1.S1_at | NM_204389.1 | Gallus gallus zona pellucida glycoprotein 3 | zpC | 64 | Â | Â |